Protein Info for OKFHMN_09655 in Escherichia coli ECRC100

Name: yfdT
Annotation: Uncharacterized protein YfdT

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

No protein families (PFam or TIGRFam), signal peptides, or transmembrane helices were found in this protein.

Best Hits

Swiss-Prot: 100% identical to YFDT_SHIFL: Uncharacterized protein YfdT (yfdT) from Shigella flexneri

KEGG orthology group: None (inferred from 96% identity to eco:b2363)

Predicted SEED Role

"FIG00643426: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (101 amino acids)

>OKFHMN_09655 Uncharacterized protein YfdT (Escherichia coli ECRC100)
MTTFTDKELIKEIKERISSLDVRDDIERRAYEIALLSLEVEPDEREAYELFMEKRFGDLV
DRRRAKNGDNEYMAWDMTLGWIVWQQRAGIHFSTMSQQEVK