Protein Info for OKFHMN_09285 in Escherichia coli ECRC101

Name: ydfG
Annotation: oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 PF00106: adh_short" amino acids 3 to 191 (189 residues), 180.9 bits, see alignment E=3.9e-57 PF01370: Epimerase" amino acids 5 to 186 (182 residues), 22 bits, see alignment E=2e-08 PF08659: KR" amino acids 5 to 181 (177 residues), 38.5 bits, see alignment E=2.3e-13 PF13561: adh_short_C2" amino acids 9 to 218 (210 residues), 133.6 bits, see alignment E=1.7e-42

Best Hits

Swiss-Prot: 46% identical to Y452_LISIN: Uncharacterized oxidoreductase Lin0452 (lin0452) from Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)

KEGG orthology group: None (inferred from 100% identity to ece:Z0343)

Predicted SEED Role

"FIG00553873: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>OKFHMN_09285 oxidoreductase (Escherichia coli ECRC101)
MDKVILITGASSGIGEGIARELGMTGAKVLLGARRVERIEAIATEICRAGGIAKARELDV
TDRQSMADFVQAALDSWGRVDVLINNAGVMPLSPLAAGKQDEWALTIDVNIKGVLWGIGA
VLPVMEAQGSGQIINLGSIGALSVVPTGAVYCASKFAVRAISDGLRQESSKIRVTCVNPG
VVESELASTITHVETMKAMDAYRSVALQPADIARAVRHIIESPESVDTTEITIRPTASAN