Protein Info for OKFHMN_07965 in Escherichia coli ECRC101

Name: ybbP
Annotation: Uncharacterized ABC transporter permease YbbP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 804 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 243 to 263 (21 residues), see Phobius details amino acids 294 to 314 (21 residues), see Phobius details amino acids 334 to 356 (23 residues), see Phobius details amino acids 377 to 397 (21 residues), see Phobius details amino acids 403 to 429 (27 residues), see Phobius details amino acids 451 to 473 (23 residues), see Phobius details amino acids 680 to 700 (21 residues), see Phobius details amino acids 728 to 747 (20 residues), see Phobius details amino acids 767 to 790 (24 residues), see Phobius details PF02687: FtsX" amino acids 247 to 362 (116 residues), 47 bits, see alignment E=1.2e-16 amino acids 683 to 793 (111 residues), 44.4 bits, see alignment E=7.6e-16

Best Hits

Swiss-Prot: 99% identical to YBBP_ECOLI: Uncharacterized ABC transporter permease YbbP (ybbP) from Escherichia coli (strain K12)

KEGG orthology group: K02004, (no description) (inferred from 99% identity to ecw:EcE24377A_0535)

Predicted SEED Role

"FIG00809136: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (804 amino acids)

>OKFHMN_07965 Uncharacterized ABC transporter permease YbbP (Escherichia coli ECRC101)
MIARWFWREWRSPSLLIVWLALSLAVACVLALGNISDRMEKGLSQQSREFMAGDRALRSS
REVPQAWLEEAQKRGLKVGKQLTFATMTFAGDTPQLANVKAVDDIYPMYGDLQTNPPGLK
PQAGSVLLAPRLMALLNLKTGDTIDVGDATLRIAGEVIQEPDSGFNPFQMAPRLMMNLAD
VDKTGAVQPGSRVTWRYKFGGSENQLDSYEKWLLPQLKPEQRWYGLEQDEGALGRSMERS
QQFLLLSALLTLLLAVAAVAVAMNHYCRSRYDLVAILKTLGAGRAQLRKLIVGQWLMVLT
LSAVTGGAIGLLFENVLMVLLKPVLPAALPPASLWPWLWALGTMTVISLLVGLRPYRLLL
ATQPLRVLRNYVVANVWPLKFYLPIVSVVVVLLLAGLMGGSMLLWAVLAGAVVLALLCGV
LGWMLLNVLRRMTLKSLPLRLAVSRLLRQPWSTLSQLSAFSLSFMLLALLLVLRGDLLDR
WQQQLPPESPNYFLINIATEQVTPLKAFLAEHQIVPESFYPVVRARLTAINGKPTEGNED
EALNRELNLTWQNTRPDHNPIVAGNWPPKADEVSMEEGLAKRLNVTLGDTVTFMGDTQEF
RAKVTSLRKVDWESLRPNFYFIFPEGALDGQPQSWLTSFRWENGNGMLTQLNRQFPTISL
LDIGAILKQVGQVLEQVSRALEVMVVLVTACGMLLLLAQVQVGMRQRHQELVVWRTLGAG
KKLLRTTLWCEFAMLGFVSGLVAAIGAETALAVLQAKVFDFPWEPDWRLWIVLPCSGALL
LSLFGGWLGARLVKGKALFRQFAG