Protein Info for OKFHMN_06975 in Escherichia coli ECRC101

Name: fimC
Annotation: molecular chaperone

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 243 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF00345: PapD_N" amino acids 22 to 142 (121 residues), 123.9 bits, see alignment E=3.8e-40 PF02753: PapD_C" amino acids 168 to 222 (55 residues), 42.8 bits, see alignment E=5.3e-15

Best Hits

Swiss-Prot: 78% identical to YBGP_ECOLI: Uncharacterized fimbrial chaperone YbgP (ybgP) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to eok:G2583_0872)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (243 amino acids)

>OKFHMN_06975 molecular chaperone (Escherichia coli ECRC101)
MTFVKGFPLILLVASMCSHGAVQPDRTRIIFNSKDKATSLRVENRSDKLPYLAYSWIENE
KGEKSDEFLVALPPIQRLEPKATSQVRIMKQAATAKLPTDRESLFYYNLREIPPVPEGSE
GHAILQVAVQSRIKLFWRPAALRKKMGDHVEQQLQVSQQNNQLTLKTPTGYYLTIAYLGR
DEKGVLPGFKSTMVAPFSSVTTSTGSYSGKQFYLGYMDDYGALRMNTLSCQRQCRLQPVE
NKK