Protein Info for OKFHMN_04930 in Escherichia coli ECRC100

Annotation: Terminase large subunit of prophage CP-933O

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 106 PF05876: GpA_ATPase" amino acids 60 to 99 (40 residues), 25.8 bits, see alignment E=4.1e-10

Best Hits

Predicted SEED Role

"Phage terminase, large subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (106 amino acids)

>OKFHMN_04930 Terminase large subunit of prophage CP-933O (Escherichia coli ECRC100)
VRGQGINYRIYLMNISEQQLNNMMSAVTTALQPLIRALPVTPVEWADQNYYLPKESSYGE
GEWKTLPFQIAIMNSMGNDQIRTVNLIKSARVGYTKMLLGGGRVFY