Protein Info for OKFHMN_01890 in Escherichia coli ECRC101

Annotation: phage tail tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 881 transmembrane" amino acids 166 to 186 (21 residues), see Phobius details PF06791: TMP_2" amino acids 65 to 127 (63 residues), 81.4 bits, see alignment 8.2e-27 amino acids 158 to 304 (147 residues), 88.4 bits, see alignment E=5.7e-29 TIGR01541: phage tail tape measure protein, lambda family" amino acids 500 to 841 (342 residues), 352.4 bits, see alignment E=1.2e-109 PF09718: Tape_meas_lam_C" amino acids 655 to 729 (75 residues), 72.4 bits, see alignment E=2.7e-24

Best Hits

KEGG orthology group: None (inferred from 99% identity to ece:Z3084)

Predicted SEED Role

"Phage tail length tape-measure protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (881 amino acids)

>OKFHMN_01890 phage tail tape measure protein (Escherichia coli ECRC101)
MAGNFADLTAVLTLDSARFSEEAARVKKELGETSALADLMSGKVSQSFRKQADAAEQSLS
RQALAAQKAGISVGQYKAAMRTLPAQFTDIVTQLAGGQNPFLIMLQQGGQISDSFGGPLS
LLTLLKEELLGIRDASESSEESLSDTANALAENARNAGELGRFMSVARVAAGGGVAVLAA
LAAAAWQAEQADRALLRSLTLTGGAAATTTAELWKMAGVISDEAGGGIRQAAENLARLAE
SGKYTAGQLRIMGETSQRWLQTVGDDAGKVEKAFEGIAADPVKALVSLNQQYNFLSVSQL
RHIDELERTKGKQVAVTEAMSLFADVMNARLEQLDKAATPVEKIWDDVKTWTSDAWAWIG
DHTLGALSLITDVVAGTVEQVKLLLVQGDLALAEFIQSAWETTKNVPGVGALFGELAEEN
RVFIEKTKRDELALRKSIAERDARIRQGEMGYINRSRATGVSKGPGQQEAVSRLAEELTG
KKHTSPKTRSAGEREEEQAREALLALEAELRTLEKHSGANEKISRQRRDLWKAESQYAVL
KEAATKRQLSEQEKSLLAHKDETLEYKRQLAELGDKVEYQKRLNELAQQAVRFEEQQSAK
QAAISAKARGLTDRQAQRESEAQRLRDVYGDNPAALAKATSALKNTRSAEEQLRGSWMAG
LKSGWGEWAESATDSFSQVKSAATQTFDGIAQNMAAMLTGAEADWRGFTRSVLSMMTEIL
LKQAMVGIVGRIGSAIGGAFGGGASASSGTAIQAAAANFHFAIGGFTGTGGKYEPAGIVH
RGEFVFTKEATSRIGVGNLYRLMRGYAEGGYVGGAGSPAQMRRAEGINFNQNNHVVIQND
GTNGQAGPQLMKAVYDMARKGAQDELRLQLRDGGMLSGSGR