Protein Info for OKFHMN_01610 in Escherichia coli ECRC100

Name: ydcO
Annotation: BenE family transporter YdcO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 43 to 66 (24 residues), see Phobius details amino acids 93 to 114 (22 residues), see Phobius details amino acids 120 to 138 (19 residues), see Phobius details amino acids 144 to 161 (18 residues), see Phobius details amino acids 168 to 188 (21 residues), see Phobius details amino acids 206 to 225 (20 residues), see Phobius details amino acids 237 to 276 (40 residues), see Phobius details amino acids 288 to 313 (26 residues), see Phobius details amino acids 319 to 339 (21 residues), see Phobius details amino acids 349 to 382 (34 residues), see Phobius details TIGR00843: benzoate transporter" amino acids 1 to 382 (382 residues), 702.7 bits, see alignment E=6.3e-216 PF03594: BenE" amino acids 7 to 381 (375 residues), 538.7 bits, see alignment E=3.7e-166

Best Hits

Swiss-Prot: 100% identical to YDCO_ECOLI: Inner membrane protein YdcO (ydcO) from Escherichia coli (strain K12)

KEGG orthology group: K05782, benzoate membrane transport protein (inferred from 100% identity to eco:b1433)

Predicted SEED Role

"Benzoate transport protein" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (390 amino acids)

>OKFHMN_01610 BenE family transporter YdcO (Escherichia coli ECRC100)
MRLFSVPPPTLLAGFLAVLIGYASSAAIIWQAAIVAGATTAQISGWMTALGLAMGVSTLT
LTLWYRVPVLTAWSTPGAALLVTGLQGLTLNEAIGVFIVTNALIVLCGITGLFARLMRII
PHSLAAAMLAGILLRFGLQAFASLDGQFTLCGSMLLVWLATKAVAPRYAVIAAMIIGIVI
VIAQGDVVTTDVVFKPVLPTYITPDFSFAHSLSVALPLFLVTMASQNAPGIAAMKAAGYS
APVSPLIVFTGLLALVFSPFGVYSVGIAAITAAICQSPEAHPDKDQRWLAAAVAGIFYLL
AGLFGSAITGMMAALPVSWIQMLAGLALLSTIGGSLYQALHNERERDAAVVAFLVTASGL
TLVGIGSAFWGLIAGGVCYVVLNLIADRNR