Protein Info for OKFHMN_00050 in Escherichia coli ECRC101

Name: yubM
Annotation: Uncharacterized protein YubM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 652 transmembrane" amino acids 454 to 470 (17 residues), see Phobius details PF02195: ParBc" amino acids 37 to 131 (95 residues), 53.5 bits, see alignment E=1.1e-18 TIGR00180: ParB/RepB/Spo0J family partition protein" amino acids 38 to 212 (175 residues), 62.3 bits, see alignment E=2.6e-21

Best Hits

Swiss-Prot: 100% identical to YUBM_ECO57: Uncharacterized protein YubM (yubM) from Escherichia coli O157:H7

KEGG orthology group: K03497, chromosome partitioning protein, ParB family (inferred from 100% identity to ecs:pO157p50)

Predicted SEED Role

"FIG00638906: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (652 amino acids)

>OKFHMN_00050 Uncharacterized protein YubM (Escherichia coli ECRC101)
MSVTESKAKTERKSSRKPAKTQETVLSALLAQTEEVSVPLASLIKSPLNVRTVPYSAESV
SELADSIKGVGLLQNLVVHALPGDRYGVAAGGRRLAALNMLAERDIIPADWPVRVKVIPQ
ELATAASMTENGHRRDMHPAEQIAGFRAMAQEGKTPAQIGDLLGYSPRHVQRMLKLADLA
PVILDALAEDRITTEHCQALALENDTARQVQVFEAACQSGWGGKPEVQTIRRLVTESEVA
VAGNSKFRFVGADTFSPDELRTDLFSDDEGGYVDCVALDAALLEKLQAVAEHLREAEGWE
WCAGRMEPVGFCREDAGTYRSLPEPEAVLTEAEEERLNELMARYDALENQCEESDLLEAE
MKLMRCMAKVRAWTPEMRAGSGVVVSWRYGNVCVQRGVQLRSEDDVADNDYRTEQVQEKA
SVEEISLPLLTKMSSERTLAVQAALMQQSDKSLALLAWTLCLNVFGSGAYSNPARIRLEC
EHYSLTSDAPSGKEGAAFMAMMAEKARLAALLPDGWARDMTTFLSLSQEVLLSLLSFCTA
CSIHGVQTREYGHTSRSPLDTLESAIGFHMRDWWQPTKANFFGHLKKPQIIAALNEAGLS
GAARDAEKMKKGDAAEHAEHHMKDNRWVPGWMCAPRPQTDATERTDNLADAA