Protein Info for OHPLBJKB_04349 in Escherichia coli HS(pFamp)R (ATCC 700891)

Annotation: 50S ribosomal protein L34

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 46 TIGR01030: ribosomal protein bL34" amino acids 1 to 44 (44 residues), 92.3 bits, see alignment E=8e-31 PF00468: Ribosomal_L34" amino acids 1 to 44 (44 residues), 85.8 bits, see alignment E=7.2e-29

Best Hits

Swiss-Prot: 100% identical to RL34_SALHS: 50S ribosomal protein L34 (rpmH) from Salmonella heidelberg (strain SL476)

KEGG orthology group: K02914, large subunit ribosomal protein L34 (inferred from 100% identity to eco:b3703)

MetaCyc: 100% identical to 50S ribosomal subunit protein L34 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L34p" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (46 amino acids)

>OHPLBJKB_04349 50S ribosomal protein L34 (Escherichia coli HS(pFamp)R (ATCC 700891))
MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTVSK