Protein Info for OHPLBJKB_03526 in Escherichia coli HS(pFamp)R (ATCC 700891)

Annotation: putative fimbrial-like protein YadC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 424 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00419: Fimbrial" amino acids 274 to 423 (150 residues), 49.7 bits, see alignment E=2.6e-17

Best Hits

Swiss-Prot: 67% identical to YADC_ECOLI: Uncharacterized fimbrial-like protein YadC (yadC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to ecy:ECSE_0135)

Predicted SEED Role

"Fimbrial protein YadC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (424 amino acids)

>OHPLBJKB_03526 putative fimbrial-like protein YadC (Escherichia coli HS(pFamp)R (ATCC 700891))
MKKFFRHFLFLILCLSCYTASAGTDDNVGYIVGNSYGVGPSDQKWRETGPNGDATVIFRY
ATSTNNLVFYKPTQLGPTGVKLQWSQLDTASGGGFLYCNRSDSTSGSAMRIENAMVDSGK
MYGSHKLFNTSVPGLYYTLLISNMWSAYGTVTNVSSPGIYIGDSAEQYFSWYNPSEDVLY
WSCNNANSTRKYWAVGGIYQTLTIEFYTDTNFDPTVTQQIKLSSSSNYLYSFKAYGAGQG
INEHSYFIKIDFDLLNVKLTNPTCFTAMLSGTSVTGSTVKMGEYSAEQIRNGATPVPFDI
SLQNCVRVTNIETKLVSTKVGTENGQLLGNTLTGNDAAKGVGVLIEGLATSKNPLMTLKP
NDSNSVYKDYDPRGKDDTTGGVYPDQDTGITYPLHFQATLQQDGTIPIEAGEFKATSTFQ
VTYP