Protein Info for OHPLBJKB_03017 in Escherichia coli HS(pFamp)R (ATCC 700891)

Annotation: Protein RhsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1397 PF20148: DUF6531" amino acids 46 to 123 (78 residues), 61.1 bits, see alignment 1.6e-20 TIGR01643: YD repeat (two copies)" amino acids 343 to 377 (35 residues), 17 bits, see alignment (E = 6.4e-07) amino acids 409 to 444 (36 residues), 17.1 bits, see alignment (E = 6.2e-07) amino acids 451 to 482 (32 residues), 15.9 bits, see alignment (E = 1.4e-06) amino acids 489 to 511 (23 residues), 18 bits, see alignment (E = 3.2e-07) amino acids 575 to 612 (38 residues), 31.2 bits, see alignment (E = 2.2e-11) amino acids 637 to 678 (42 residues), 24.2 bits, see alignment (E = 3.5e-09) PF05593: RHS_repeat" amino acids 489 to 511 (23 residues), 24.8 bits, see alignment (E = 3.4e-09) amino acids 534 to 568 (35 residues), 29.2 bits, see alignment (E = 1.5e-10) amino acids 575 to 611 (37 residues), 37 bits, see alignment (E = 5.1e-13) amino acids 617 to 652 (36 residues), 23.7 bits, see alignment (E = 7.6e-09) amino acids 637 to 674 (38 residues), 38.8 bits, see alignment (E = 1.4e-13) amino acids 859 to 892 (34 residues), 22 bits, see alignment (E = 2.6e-08) PF03527: RHS" amino acids 1143 to 1180 (38 residues), 52.3 bits, see alignment (E = 5.8e-18) TIGR03696: RHS repeat-associated core domain" amino acids 1170 to 1247 (78 residues), 83.6 bits, see alignment 1.1e-27

Best Hits

Swiss-Prot: 98% identical to RHSC_ECOLI: Protein RhsC (rhsC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 98% identity to ecw:EcE24377A_0727)

Predicted SEED Role

"core protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1397 amino acids)

>OHPLBJKB_03017 Protein RhsC (Escherichia coli HS(pFamp)R (ATCC 700891))
MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPTGVACSVCPGGVTSGHPVNPLLGAKVLPG
ETDIALPAPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADIRLQLRDNTLILSDNGGRS
LYFEHLFPGEDGYSRSESLWLVRGGVAKLDEGHRLAALWQALPEELRLSPHRYLATNSPQ
GPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGRTQTFHREAAGEFSGEITGVTDG
AGRHFRLVLTTQAQRAEEARQQAISGGTEPSAFPDTLPGYTEYGRDNGIRLSAVWLTHDP
EYPENLPAAPLVRYGWTPRGELAAVYDRSNTQVRSFTYDDKYRGRMVAHRHTGRPEIRYR
YDSDGRVTEQLNPAGLSYTYQYEKDHITITDSLDRREVLHTQGEAGLKRVVKKEHADGSV
TQSQFDAVGRLRTQTDAAGRTTEYSPDVVTGLITRITTPDGRASAFYYNHHSQLTSATGP
DGLEIRREYDELGRLIQETAPDGDITRYRYDNPHSDLPCATEDATGSRKTMTWSRYGQLL
SFTDCSGYVTRYDHDRFGQMTAVHREEGLSQYRAYDSRGQLIAVKDTQGHETRYEYNIAG
DLTAVIAPDGSRNGTQYDAWGKAVRTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDV
LDRLIQETGFDGRTQRYHHDLTGKLIRSEDEGLVTHWHYDEADRLTHRTVKGETAERWRY
DERGWLTDISHISEGHRVTVHYGYDEKGRLTGERQTVHHPQTEALLWQHETRHAYNAQGL
ANRCIPDSLPAVEWLTYGSGWLSGMKLGDTPLVEYTRDRLHRETLRSFGRYELSTAYTPA
GQLQSQHLNSLQYDRDYTWNDNGELIRISSPRQTRSYSYSTTGRLTSVHTTAANLDIRIP
YATDPAGNRLPDPELHPDSTLSMWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTD
DERTHQYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSR
KPEVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADTLQQ
SGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPA
RKIHLYHCDHRGLPLALISKEGATEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEES
GLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPISNIDPLGLETLKCIKPLHSMG
GTGERSGPDIWGNPFYHQYLCVPDGKGDYTCGGQDQRGESKGDGLWGPGKASNDTKEAAG
RCDLVETDNSCVENCLKGKFKEVRPRYSVLPDIFTPINLGLFKNCQDWSNDSLETCKMKC
SGNNIGRFIRFVFTGVM