Protein Info for OHPLBJKB_01859 in Escherichia coli HS(pFamp)R (ATCC 700891)

Annotation: Inner membrane protein YecN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 131 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 72 to 91 (20 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details PF01124: MAPEG" amino acids 4 to 120 (117 residues), 86.9 bits, see alignment E=6.6e-29

Best Hits

Swiss-Prot: 100% identical to YECN_ECOLI: Inner membrane protein YecN (yecN) from Escherichia coli (strain K12)

KEGG orthology group: K07136, (no description) (inferred from 100% identity to eco:b1869)

Predicted SEED Role

"FIG01046209: inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (131 amino acids)

>OHPLBJKB_01859 Inner membrane protein YecN (Escherichia coli HS(pFamp)R (ATCC 700891))
MVSALYAVLSALLLMKFSFDVVRLRMQYRVAYGDGGFSELQSAIRIHGNAVEYIPIAIVL
MLFMEMNGAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRSGMSATWCALLLMVLANLW
YMPWELVFSLR