Protein Info for OHPLBJKB_01779 in Escherichia coli HS(pFamp)R (ATCC 700891)

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 transmembrane" amino acids 14 to 33 (20 residues), see Phobius details amino acids 42 to 60 (19 residues), see Phobius details amino acids 66 to 90 (25 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 178 to 201 (24 residues), see Phobius details amino acids 212 to 236 (25 residues), see Phobius details PF01311: Bac_export_1" amino acids 14 to 246 (233 residues), 229.5 bits, see alignment E=2.1e-72 TIGR01400: flagellar biosynthetic protein FliR" amino acids 14 to 255 (242 residues), 273.8 bits, see alignment E=6.9e-86

Best Hits

Swiss-Prot: 99% identical to FLIR_ECOLI: Flagellar biosynthetic protein FliR (fliR) from Escherichia coli (strain K12)

KEGG orthology group: K02421, flagellar biosynthetic protein FliR (inferred from 99% identity to eco:b1950)

Predicted SEED Role

"Flagellar biosynthesis protein FliR" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (261 amino acids)

>OHPLBJKB_01779 hypothetical protein (Escherichia coli HS(pFamp)R (ATCC 700891))
MLQVTSEQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKLGLAMMITFAIAPSLPA
NDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEIIGLQMGLSFATFVDPASHL
NMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIGGEPLNSNAFLALTKAGSLIF
LNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGISLMAALMPLIASFC
EHLFSEIFNLLADIISELPLI