Protein Info for OHPLBJKB_00750 in Escherichia coli HS(pFamp)R (ATCC 700891)

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 235 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 32 to 51 (20 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 102 to 123 (22 residues), see Phobius details amino acids 136 to 182 (47 residues), see Phobius details amino acids 185 to 206 (22 residues), see Phobius details amino acids 213 to 233 (21 residues), see Phobius details PF04474: DUF554" amino acids 3 to 227 (225 residues), 229 bits, see alignment E=2.5e-72

Best Hits

Swiss-Prot: 100% identical to YQGA_ECOLI: Uncharacterized protein YqgA (yqgA) from Escherichia coli (strain K12)

KEGG orthology group: K07150, (no description) (inferred from 100% identity to eco:b2966)

Predicted SEED Role

"Putative inner membrane protein YqgA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (235 amino acids)

>OHPLBJKB_00750 hypothetical protein (Escherichia coli HS(pFamp)R (ATCC 700891))
MVIGPFINASAVLLGGVLGALLSQRLPERIRVSMTSIFGLASLGIGILLVVKCANLPAMV
LATLLGALIGEICLLEKGVNTAVAKAQNLFRHSRKKPAHESFIQNYVAIIVLFCASGTGI
FGAMNEGMTGDPSILIAKSFLDFFTAMIFACSLGIAVSVISIPLLIIQLTLAWAAALILP
LTTPAMMADFSAVGGLLLLATGLRICGIKMFPVVNMLPALLLAMPLSAAWTAWFA