Protein Info for OHPLBJKB_00735 in Escherichia coli HS(pFamp)R (ATCC 700891)

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1518 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF13322: DUF4092" amino acids 417 to 585 (169 residues), 308.6 bits, see alignment E=2.1e-96 PF17291: M60-like_N" amino acids 1077 to 1163 (87 residues), 46.6 bits, see alignment 4.5e-16 PF13402: Peptidase_M60" amino acids 1171 to 1463 (293 residues), 124.3 bits, see alignment E=1e-39

Best Hits

Swiss-Prot: 94% identical to ACFD_ECOH1: Putative lipoprotein YghJ (yghJ) from Escherichia coli O78:H11 (strain H10407 / ETEC)

KEGG orthology group: K10939, accessory colonization factor AcfD (inferred from 100% identity to ecm:EcSMS35_3251)

Predicted SEED Role

"Accessory colonization factor AcfD precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1518 amino acids)

>OHPLBJKB_00735 hypothetical protein (Escherichia coli HS(pFamp)R (ATCC 700891))
MNKKFKYKKSLLAAILSATLLAGCDGGGSGSSSDTPPVDSGTGSLPEVKPDPTPNPEPTP
EPTPDPEPTPEPIPDPEPTPEPEPEPVPTKTGYLTLGGSQRVTGATCNGESSDGFTFKPG
EDVTCVAGNTTIATFNTQSEAARSLRAVEKVSFSLEDAQELAGSDDKKSNAVSLVTSSNS
CPANTEQVCLTFSSVIESKRFDSLYKQIDLAPEEFKKLVNEEVENNAATDKAPSTHTSPV
VPVTTPGTKPDLNASFVSANAEQFYQYQPTEIILSEGRLVDSQGYGVAGVNYYTNSGRGV
TGENGEFSFSWGETISFGIDTFELGSVRGNKSTIALTELGDEVRGANIDQLIHRYSTTGQ
NNTRVVPDDVRKVFAEYPNVINEIINLSLSNGATLGEGEQVVNLPNEFIEQFNTGQAKEI
DTAICAKTDGCNEARWFSLTTRNVNDGQIQGVINKLWGVDTNYKSVSKFHVFHDSTNFYG
STGNARGQAVVNISNAAFPILMARNDKNYWLAFGEKRAWDKNELAYITEAPSIVRPENVT
RETATFNLPFISLGQVGDGKLMVIGNPHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDM
KNFMENVLRYLSNDRWLPDAKSNMTVGTNLDTVYFKKHGQVTGNSAAFGFHPDFAGISVE
HLSSYGDLDPQEMPLLILNGFEYVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYMNKG
GSVLIMENVMSNLKEESASGFVRLLDAAGLSMALNKSVVNNDPQGYPDRVRQRRSTPIWV
YERYPAVDGKPPYTIDDTTKEVIWKYQQENKPDDKPKLEVASWQEEVEGKQVTQFAFIDE
ADHKTPESLAAAKKRILDAFPGLEECKDSDYHYEVNCLEYRPGTGVPVTGGMYVPQYTQL
SLNADTAKAMVQAADLGTNIQRLYQHELYFRTNGRKGERLSSVDLERLYQNMSVWLWNKI
EYRYENDKDDELGFKTFTEFLNCYANNAYDGGTQCSAELKQSLIDNKMIYGEGSKAGMMN
PSYPLNYMEKPLTRLMLGRSWWDLNIKVDVEKYPGAVSAEGEEVTETINLYSNPTKWFAG
NMQSTGLWAPAQQEVSIKSNAKVPVTVTVALADDLTGREKHEVALNRPPRVTKTYSLDAS
GTVKFKVPYGGLIYIKSDSKEEKSANFTFTGVVKAPFYKDGKWKNDLKSPAPLGELESAS
FVYTTPKKNLEASNYKGGLKQFAEDLDTFASSMNDFYGRDGESGKHRMFTYEALTGHKHR
FTNDVQISIGDAHSGYPVMNSSFSPNSTTLPTTPLNDWLIWHEVGHNAAETPLTVPGATE
VANNVLALYMQDRYLGKMNRVADDITVAPEYLEESNGQAWARGGAGDRLLMYAQLKEWAE
KNFDIKQWYPEGSLPAFYSEREGMKGWNLFQLMHRKARGDDVGNDKFGNRNYCAESNGNA
ADTLMLCASWVAQTDLSAFFKKWNPGANAYQLPGATEMSFEGGVSQSAYNTLASLDLPKP
KQGPETINKVTEYSMPAE