Protein Info for OHPLBJKB_00716 in Escherichia coli HS(pFamp)R (ATCC 700891)

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 449 transmembrane" amino acids 30 to 58 (29 residues), see Phobius details amino acids 99 to 122 (24 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 181 to 210 (30 residues), see Phobius details amino acids 260 to 282 (23 residues), see Phobius details amino acids 317 to 340 (24 residues), see Phobius details amino acids 353 to 371 (19 residues), see Phobius details amino acids 383 to 431 (49 residues), see Phobius details PF01943: Polysacc_synt" amino acids 19 to 280 (262 residues), 35.6 bits, see alignment E=7.4e-13 PF13440: Polysacc_synt_3" amino acids 75 to 283 (209 residues), 30.9 bits, see alignment E=1.7e-11

Best Hits

KEGG orthology group: None (inferred from 99% identity to ecz:ECS88_3365)

Predicted SEED Role

"Inner membrane protein YghQ, probably involved in polysaccharide biosynthesis"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (449 amino acids)

>OHPLBJKB_00716 hypothetical protein (Escherichia coli HS(pFamp)R (ATCC 700891))
MAGFNIKHWFADGAFRTIIRNSAWLGSSNVVSALLGLLALSCAGKGMTPAMFGVLVIVQS
YAKSISDFIKFQTWQLVVQYGTPALTNNNPQQFRNVVSFSFSLDIVSGAVAIVGGIALLP
FLSHSLGLDDQSFWLAALYCTLIPSMASSTPTGILRAVDRFDLIAVQQATKPFLRAAGSV
AAWYFDFGFAGFVIAWYVSNLVGGTMYWWFAARELRRRNIHNAFKLNLFESARHIKGAWS
FVWSTNIAHSIWSARNSCSTVLVGIVLGPAAAGLFKIAMTFFDAAGTPAGLLGKSFYPEV
MRLDPRTTRPWLLGVKSGLLEGGIGILVALAVLIVGKPLISLVFGVKYLEAYDLIQVMLG
AIVISMLGFPQESLLLMAGKQRAFLVAQTIASIGYIVLLFMFCHLFGVLGAAFAYFGGQC
LDVVLSLIPTLKAFFQRHSLLYNAAGEKS