Protein Info for OHPLBJKB_00597 in Escherichia coli HS(pFamp)R (ATCC 700891)

Annotation: Inner membrane protein YqjF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 160 transmembrane" amino acids 37 to 56 (20 residues), see Phobius details amino acids 76 to 96 (21 residues), see Phobius details amino acids 102 to 121 (20 residues), see Phobius details amino acids 133 to 152 (20 residues), see Phobius details PF07681: DoxX" amino acids 38 to 117 (80 residues), 75.8 bits, see alignment E=1.7e-25

Best Hits

Swiss-Prot: 100% identical to YQJF_ECOLI: Inner membrane protein YqjF (yqjF) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to sdy:SDY_3290)

Predicted SEED Role

"Inner membrane protein YqjF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (160 amino acids)

>OHPLBJKB_00597 Inner membrane protein YqjF (Escherichia coli HS(pFamp)R (ATCC 700891))
MILSIDSNDANTAPLHKKTISSLSGAVESMMKKLEDVGVLVARILMPILFITAGWGKITG
YAGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNF
AEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW