Protein Info for OHPLBJKB_00478 in Escherichia coli HS(pFamp)R (ATCC 700891)

Annotation: Putative cryptic C4-dicarboxylate transporter DcuD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 106 transmembrane" amino acids 6 to 19 (14 residues), see Phobius details amino acids 26 to 48 (23 residues), see Phobius details amino acids 68 to 89 (22 residues), see Phobius details PF03606: DcuC" amino acids 2 to 105 (104 residues), 96.8 bits, see alignment E=5.8e-32

Best Hits

Predicted SEED Role

"Putative cryptic C4-dicarboxylate transporter DcuD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Find the best match in UniProt

Protein Sequence (106 amino acids)

>OHPLBJKB_00478 Putative cryptic C4-dicarboxylate transporter DcuD (Escherichia coli HS(pFamp)R (ATCC 700891))
MFGIIISVIVLITMGYLILKNYKPQVVLAAAGIFLMMCGVWLGFGGVLDPTKSSGYLIVD
IYNEILRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRR