Protein Info for OHPLBJKB_00109 in Escherichia coli HS(pFamp)R (ATCC 700891)

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 PF03527: RHS" amino acids 128 to 164 (37 residues), 57.7 bits, see alignment 8e-20 TIGR03696: RHS repeat-associated core domain" amino acids 155 to 232 (78 residues), 84.4 bits, see alignment E=3.1e-28 PF15606: Ntox34" amino acids 283 to 357 (75 residues), 145.3 bits, see alignment E=4.7e-47

Best Hits

Predicted SEED Role

"core protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (362 amino acids)

>OHPLBJKB_00109 hypothetical protein (Escherichia coli HS(pFamp)R (ATCC 700891))
MSLSRKPEVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLA
DTLQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDP
VYTPARKIHLYHCDHRGLPLALISTEGTTAWYAEYDEWGNQLNEENPHQLQQLIRLPGQQ
YDEESGLYYNRHRYYDPLRGRYITQDPIGLKGGWNFYQYPLNPVTNTDPLGLEVFPRPFP
LPIPWPKSPAQQQADDNAAKALTKWWNDTASQRIFDSLILNNPGLALDITMIASRGNVAD
TGITDRVNDIINDRFWSDGKKPDRCDVLQELIDCGDISAKDAKSTQKAWNCRHSRQSNDK
KR