Protein Info for OH686_23550 in Pseudomonas sp. S08-1

Annotation: RND efflux system, inner membrane transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1038 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details transmembrane" amino acids 337 to 356 (20 residues), see Phobius details amino acids 362 to 383 (22 residues), see Phobius details amino acids 389 to 413 (25 residues), see Phobius details amino acids 428 to 453 (26 residues), see Phobius details amino acids 465 to 487 (23 residues), see Phobius details amino acids 528 to 546 (19 residues), see Phobius details amino acids 859 to 877 (19 residues), see Phobius details amino acids 884 to 904 (21 residues), see Phobius details amino acids 910 to 930 (21 residues), see Phobius details amino acids 961 to 981 (21 residues), see Phobius details amino acids 987 to 1011 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 7 to 1010 (1004 residues), 472 bits, see alignment E=5.6e-145 PF03176: MMPL" amino acids 822 to 1013 (192 residues), 31.3 bits, see alignment E=1.6e-11 PF02355: SecD_SecF" amino acids 845 to 1007 (163 residues), 24 bits, see alignment E=3.6e-09

Best Hits

KEGG orthology group: None (inferred from 62% identity to geb:GM18_4445)

Predicted SEED Role

"RND efflux transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1038 amino acids)

>OH686_23550 RND efflux system, inner membrane transporter  (Pseudomonas sp. S08-1)
MSRFNLSAFAVRNRAITLFLILATLVAGAIAFGKLGRAEDPSFTVKTMTITAAWPGATAR
EMQEQVADRLEKRLQELDLYDRVETIAQPGFVSMKLQYQDSTRPKDIQALFYQTRKKLTD
EAKRLPRGVIGPFFNDEYSDVYFALYALEAGQMPHRQLVQMAEDLRQGMLRLPGVKKVNI
LGEQAQRIFVEFSYERLATLGLKPEQIFEALGKQNGVAPAGFVETSGPRAYIRLDGAFDS
LTLIENVPINAGGKLLRIADVATVRRGYEDPPTYRIRHQGEPALMLGVIMEPHFNGLELD
KSLQAEEDRIHAELPLGVMFDKVSDQAEKIRIAVNEFMLKFFVALGVVMLISLLALGFRV
GLVVAAAVPLTLAIVFVVMLLTGREFDRITLGALILSLGLLVDDAIIAIEMMVVKLEEGL
DRIQAATFAWTSTAAPMLTGTLVTVIGFLPVGFAKSGAGEYAGNIFWIVGFALLASWVVA
VFFTPYLGVKMLPKIQPVAGGHDALYANALYQRLRALITWCVNHRKTVTALVVAAFVVSG
LGMGAVKKQFFPNSDRSELLVEVYMPPGSAFKATEGVVAQVEKALLEEPQTKLVDAYVGG
GAPRFFLSLNPELPDPAFAKIIVQTADSKSRDALRERIQARIAAGEFPSARVRVTQLVFG
PPVPFPVVFRVSGPHLEQLRQISENVRQIVAANPKTRDTFVDWGDRVSSYRLVLDQDRLR
LLGFTPDEVKSQLNALLTGNPVTEVREGTRTVTVMVRAQNAQRENLGGIEGLTITNAAGV
SIPLEQVGRFQPVMEEPILKRRDRDLTFEVRADIIKGTQPPDVGKAVYADLQPLIAQLPA
GYRVTIGGPVEESAKANKALAVLFPVMILLTLVVIMFQVRSFALMFMVFATAPLGLIGAV
PVLLLFDQPFGFNAILALIGIGGILMRNTLIFTDQIEQEQAHGRPLREAIIEATVRRARP
VLLTALAAALAFIPLTFSVFWSSLAFVLIGGVLIGTVLTLLFLPALCALVLRVNRGPKAS
TGPDWEKLSVQQAPLEAH