Protein Info for OH686_23445 in Pseudomonas sp. S08-1

Annotation: protein of unknown function DUF1232

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 126 transmembrane" amino acids 36 to 55 (20 residues), see Phobius details amino acids 65 to 87 (23 residues), see Phobius details amino acids 103 to 123 (21 residues), see Phobius details PF06803: DUF1232" amino acids 34 to 70 (37 residues), 53.4 bits, see alignment E=8.8e-19

Best Hits

KEGG orthology group: None (inferred from 66% identity to pva:Pvag_pPag30392)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (126 amino acids)

>OH686_23445 protein of unknown function DUF1232 (Pseudomonas sp. S08-1)
MFGLNRLRHWARALKRDVHALWLAARDARTPRLAKLLALLVAAYALSPIDLIPDFIPVLG
YMDDLIIVPLGIWLVVRLIPAGLMAEFRALASQASARPISKMAACFVVLVWLALGVGLVI
WLMPSR