Protein Info for OH686_23075 in Pseudomonas sp. S08-1

Annotation: Organosulfonate ABC transporter permease protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 68 to 88 (21 residues), see Phobius details amino acids 103 to 121 (19 residues), see Phobius details amino acids 126 to 147 (22 residues), see Phobius details amino acids 168 to 208 (41 residues), see Phobius details amino acids 224 to 242 (19 residues), see Phobius details PF00528: BPD_transp_1" amino acids 80 to 245 (166 residues), 81.7 bits, see alignment E=3e-27

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 87% identity to ppu:PP_0208)

Predicted SEED Role

"Alkanesulfonates transport system permease protein" in subsystem Alkanesulfonate assimilation or Alkanesulfonates Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (259 amino acids)

>OH686_23075 Organosulfonate ABC transporter permease protein (Pseudomonas sp. S08-1)
MSSLYRWPLRLASLAACLLFWQLAATARLDLGLLTFTYVPTPGAVLDAAWQLLHSSQLLA
HLTSSLGRVFAGYLSAAVIGVLLGLAIGRSKWAEDSLLPPLEVLRPIPAVAWIPLAILMF
PSSELSMVFITFTGALFPILLNTIHGVEGVDPRLIASARSLGAGRLAILREVILPGAAPS
IVTGLAIGMGTSWFCLVTAEMISGQFGIGYYTWESYTIQNYPDIVVGMLLIGLLGMASSG
LVKRLGGLATPWYRSGAQR