Protein Info for OH686_20640 in Pseudomonas sp. S08-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3535 TIGR01965: VCBS repeat" amino acids 115 to 189 (75 residues), 26.2 bits, see alignment (E = 1e-09) TIGR03660: T1SS-143 repeat domain" amino acids 228 to 352 (125 residues), 67.3 bits, see alignment (E = 1.9e-22) amino acids 406 to 549 (144 residues), 69.5 bits, see alignment (E = 4.3e-23) amino acids 751 to 896 (146 residues), 70 bits, see alignment (E = 3.1e-23) amino acids 1091 to 1219 (129 residues), 69.2 bits, see alignment (E = 5.4e-23) PF00092: VWA" amino acids 1229 to 1411 (183 residues), 36.9 bits, see alignment 6.6e-13 amino acids 2491 to 2645 (155 residues), 24.2 bits, see alignment (E = 5.2e-09) PF13519: VWA_2" amino acids 1230 to 1342 (113 residues), 31.4 bits, see alignment (E = 3.7e-11) amino acids 2492 to 2609 (118 residues), 43.8 bits, see alignment (E = 5.3e-15) PF00353: HemolysinCabind" amino acids 3355 to 3389 (35 residues), 31.3 bits, see alignment (E = 2.3e-11) amino acids 3382 to 3415 (34 residues), 29.1 bits, see alignment (E = 1.1e-10) TIGR03661: type I secretion C-terminal target domain (VC_A0849 subclass)" amino acids 3433 to 3516 (84 residues), 30.5 bits, see alignment (E = 1e-10)

Best Hits

Predicted SEED Role

"T1SS secreted agglutinin RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (3535 amino acids)

>OH686_20640 hypothetical protein (Pseudomonas sp. S08-1)
MLLGEVGGALDPVIGFPTEGLNTGPEFPDPEPIVTDEPVADFTPSVEVEYEDANGNISVG
PAIVDEEALADGTNPGSGAEQASGSIIITSPDGVSSLQIQGFDGVWVDVTNGGVVVGQYG
TLTVDAAGNWTYTLTDNTLDHPNTGASGAADQVGESFPVRVFDLDGDVSPTVQLNVLVND
DAPILTEGEGAQVAAIVDEDETSDGITDGDSVTNVAAGGPGTLSALVNFGADGIGSFGLS
GSATAISSVEAQGLTSGGTALGYSVAGNVLTASAGGETIFTLQVGADGSFTFTLVGQLDH
PTPDGNDDELLELPIDFSGVLTAVDGDGDSVGTFTGGSFVIDVEDDVPQWAGGRGEGEEQ
FFPRVSDLVHEDALTTGGGAPHDGNPEGGQTTTASGLAGSLSALVDFGADGPGDFGLSSD
VSSMDLQGLTSGGDPLTYEVVGNVLTASAGGETIFTLTVNADGSWEFVLQGPIDHPVADG
TFDSEDLPGLGIDFSGILTATDGDGDPLVGGFPSGSFAVDIEDDVPVVAGGEGNEVSGVV
HEDALTIGGGAPYEGNPESGQTTTVGSATSGSLSGLVSFGADGPGDFGLSSDVSSMDLQS
LTSGGDPLTYEVVGNVLIASAGGETIFTLTVDADGSWQFVLEGPLDHPVADGAMDDELLP
GLGIDFSGVLTVTDGDGDPLAGGFPTGSFTVNVEDDVPRPDGGEKNVIHQEVQEDALTLV
DGAPYEGNEEGGQTTVASGDPGDLLALIDFGADGPGTVGLSSDTSSLDAQDLMSEGTELS
YSVIGNVLTATANGNTIFTLTVDPDGSYEFVLSGPLDHPIADSALDDETLAGLGIDFSQM
ITATDGDGDPLSVSLPNGTFAIDVEDDVPVAREFSQRPWVSNQVDEDEITGGITDGDGVT
NVANGAAGALYAAINFGADGPGTIGMTGSPAAIGALEAQGLTSGGVALSFTVVGNLLTAT
AGGDTIFTLQVNGDGSYTFTLSGPLDHPVADGTPAGDNELLASGIDFSSVITATDGDGDP
LSGLNPGSFVIRVEDDIPVAVPLQYDNEQNPIPLVSGQVDEDELPNGIGDGDSEGTSVSG
PAGTLNALVNFGADGPGDFGLSDDPLDIATLEAQGLTSDSIPLSYSVVGNVLTATAGGNP
VFTLTVNADGSYSFQLQGPLDHPLPGSTDDDQLLGLPIDFSGVLTATDGDGDPVDGFADG
SFVINVEDDVPVAQNDNATVLSGQAQNINLVFVLDFSGSIDNTELNAMLDAVRAAGQELF
NTATGAVQIQIVAFSGTSVSFPAIDNIADFTALVNSLNPQEPGGARPLNGLTDFTDAIQE
TMSVYTPLPGWTNQVIFISDGNPNEQTGPGGAPSLTEPTATNWNNFVDNNGINVTTIGIG
DNIDDPRLEDIDVDAGANNDPLRVDDFDDLVDTLVDQVIGGLVGGNVLLGNDNAVGGGDD
DAFGADGRGQILSIEINGTTYTWDGTADGDQQLTDIATAEGGKLSFNFSTGAWSYQAPDS
VDGDKTETFTYTIIDNDGDPSTATLEIYVEDSSPVEATVTDDAVAGGIPDGDGLTASVSG
SVASLAVGPDTAVFSLNAGGIGGLTGATSGGVALVYSISSNVLTATAGPAGPTVFTLEVG
PSGSYTFTLDRALDHPLGNGDDNEQLTLNFASVLEAETAGGAPVDLAGAFLIHVEDDVPV
VDILPNSAASVAEGATYNGAWTHGMGGDDAGSIKVLVGPNEYNLNTNISLASGTLRVNSD
GTWSFQAGSGLDQDVINSQTFSVRVRDYDQDTATDSFTIRITDAGAPTGGQTSNAVDEEG
LTNGISGGPNDAAGTDTTVTGNLGYSFGPDGAAPVGAFTWSTAGLPALTSGGTALTYSVS
ADGQTLTAAKVGGGTTVFTVKVTNVSTGAYEFKLLQPLDHSAPVSPTGSDENNIDLSFAY
TVKDDDGSTANGSLGISVDDDSPAVNLLPDTPVNMAEGTTYSSGTWSGGYGADGGGSAKV
LVGANEYSLNTNIALDTGILRVNSNGTWSFQAANGLDQDIYNSQSFSVQVRDYDQDTVTD
SVTINITDAAKPSGGTANNAVDEEGLSNGIAGGPNDAAGTDTTVTGNLGYSFGPDGAAPV
GAFAWSTAGLPALTSGGTALTYSVSADGLTLTAAKVGGGATVFTVKVTDVATGAYEFKLL
LPLDHPAPVSPTGSDENNIGLSFGYTVQDDDGSTANGSLGISVDDDSPAVNLLPDAPVNV
AEGTSYNSGTWTSGYGADGAGSIKVLVGANEYNLDADIALATGTLRVNSDGTWSFQAANG
LDQDVINSQSFSVRVRDYDQDTVTDSVTINITDAAKPTGGTANNAVDEDGLANGVAGGPN
DAAGADTTVTGTLGYSFGADGAAPVGAFTWSTGGLPALTSGGTALTYSVSSDGLTLTAAK
VGGGATVFTVKVTDVATGAYEFKLLLPLDHSAPVAPVTSDENNINLNFSYTVKDDDGSTA
NGSLGISVDDDSPTAKDNTISVTEGGVPPFNLILVVDTSGSMLYEIGGNTQGSPNRLELA
KEALSNMIDSYAALGVDLAITVIDFATGALLIPQTTDPDVAKLNIQNLATDGGNTNYNAP
LVLAQNQLTADLVNLPDYEHRVYFLSDGQPNVGNVPAGWTSFIDASGAEVYAVGLSVSGN
AGAIAQLGLVEDHGDAVTLIDDPYDLDATLQATVPQPTMGNMVTDVDPVDGVDTSGADVP
VTVTQISFVAADPSAYIGVADSIVGNVVTFLVQGGTTGPIETPLGGTLVVNANGSYSYTP
PNDVLVDSQEVFTYTIVDKDGDKSSADLTINVLDTSPIVANVYEDGLPNGLPDPGSNVTS
VSGTLAGAVVDSAGVTFSLGSVAGLPALTADGVAITYSVVDGPTSDTLTAKAGTVDIFTL
VLQANGSYTFNLLGAIDHATANGDDQELKDLDLSSVIVAKEGVTNVPLIRDFIVQVEDDV
PVIQSTSNLVYSNSSNPGGATGVFDYSTGADTRDTGPFSASDSDFKSITLTGSVGGAAIS
SQSVTWVSESATTATFDIEFEYAPNPSNPGVKEQAEGTLTFDKVNGTYTVTLDGPIEGFQ
VLKTSATLGITGYVPGGSTVDPTNPEVAVSQLASDFFVQFRSYAETGGGTGSNNLQTGGA
NTTVFVNGETFTQTGSYVTLSNSANGVAGDTIGQGEVLDLNFYTANPTGNLGVTPTGRAD
GIFLKFDGINSEDLVIVLKLVGAGGATTTRALVVSNSDIYRNSSGATALAALAVYGITLD
NNDGAIVIESNDFNGAGESWQIYGAQILTTVEGITTTVAIDYDRDFNDGFDGLTNFNNQT
DNDVVKVSDIGFIKTQTTTVDADLDFQVAVQDADNDATSSVNLHVTIEAGNVFNGTALAD
AIQGTAGNDTLNGLGGNDILSGLAGADTLDGGAGNDLLIGGLGNDLLIGGADKDTYQWTA
GNTDTDTVQGFVSNFNGNAQGDRLDLSQLLTGEHGQAGDIGNLLSFIDISTANLGGGAAL
DTVIKVSDTATGDPSTSTEQTIVLQDVNLLTLYGGGESGTILGMLGDGTLKVDVA