Protein Info for OH686_19615 in Pseudomonas sp. S08-1

Annotation: AzlC protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 transmembrane" amino acids 15 to 38 (24 residues), see Phobius details amino acids 48 to 80 (33 residues), see Phobius details amino acids 101 to 118 (18 residues), see Phobius details amino acids 131 to 154 (24 residues), see Phobius details amino acids 164 to 183 (20 residues), see Phobius details amino acids 189 to 224 (36 residues), see Phobius details PF03591: AzlC" amino acids 16 to 158 (143 residues), 150.4 bits, see alignment E=2.2e-48

Best Hits

KEGG orthology group: None (inferred from 83% identity to pfv:Psefu_3155)

Predicted SEED Role

"AzlC protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (236 amino acids)

>OH686_19615 AzlC protein (Pseudomonas sp. S08-1)
MSRHHEFLQGTRDMLPMLLGAMPFGIIYGSLAGAAGLTPWQTIGMSVLVFAGSAQFIAIS
LLGGGATLAVLWLTTLVVNLRHALYSASLQPFVRHLPKRWRVPLAFWLTDEAFAVVQHRY
AETDASPHKHWYFLGAGLAMYGNWLACTLVGLVFGQAVPNIGDWGLDFAMLATFIGIVVP
MLRNCPQVAAAFVAAGVAVACHGLPYKLGLMAAAFAGIVVGVVLERRYRLLQDEVF