Protein Info for OH686_18570 in Pseudomonas sp. S08-1

Annotation: Transcriptional regulator, AraC family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 PF12852: Cupin_6" amino acids 2 to 156 (155 residues), 103.2 bits, see alignment E=2.2e-33 PF00165: HTH_AraC" amino acids 180 to 220 (41 residues), 32.3 bits, see alignment 1.3e-11 amino acids 238 to 270 (33 residues), 31.9 bits, see alignment 1.7e-11 PF12833: HTH_18" amino acids 193 to 270 (78 residues), 72.8 bits, see alignment E=3.6e-24

Best Hits

KEGG orthology group: None (inferred from 89% identity to ppw:PputW619_3237)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (274 amino acids)

>OH686_18570 Transcriptional regulator, AraC family (Pseudomonas sp. S08-1)
MDRLSTLLKHFNLHASTFHQGGLCGTTSLYGQHGVGHAHLLRSGRLALRDKRGQLIELTE
PSLILAVRPQEHQLSASEADGAELVCATLQFDGGANNPLTLALPDFIIKPLRELQGLDGT
LDWLFDEAFGDECGRDVILNRLFELMVIQLLRHLLASRSIDSGMMAGLANPQLSRALVVI
HNEPQQNWSVAELADRAGMSRASFAAHFRETVGATPADYLANWRISLTQKRLREGRPIAL
IADEVGYESPSALARTFRRKVGASPREWLQQNTA