Protein Info for OH686_18230 in Pseudomonas sp. S08-1
Annotation: Uncharacterized conserved protein YfiP, contains DTW domain
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 49% identical to YFIP_ECOLI: DTW domain-containing protein YfiP (yfiP) from Escherichia coli (strain K12)
KEGG orthology group: K05812, conserved hypothetical protein (inferred from 75% identity to pag:PLES_14291)MetaCyc: 49% identical to tRNA 3-amino-3-carboxypropyltransferase (Escherichia coli K-12 substr. MG1655)
tRNA-uridine aminocarboxypropyltransferase. [EC: 2.5.1.25]
Predicted SEED Role
"FIG074102: hypothetical protein"
Isozymes
No predicted isozymesUse Curated BLAST to search for 2.5.1.25
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (237 amino acids)
>OH686_18230 Uncharacterized conserved protein YfiP, contains DTW domain (Pseudomonas sp. S08-1) MSHAVARLRAERLARSLKPFVSRGSRSERCPGCRVIPSYCLCAWRPKVEVQAGVCLLMYD VEALKPSNTGWLIADLVADTHAFGWQRTAVDPRLLALLDDPQYAPCVVFPGEYAEPERVI EELPPLATGKRPLFILLDATWTEARKMFRKSPYLNRFPVLSLRPEQLSRYRLRRSKRDEH LCTAEVAALCLELAGEPQAAVALDAWLDLFTEHYLGAKHRRVLDEQSPAHQALKPFL