Protein Info for OH686_17845 in Pseudomonas sp. S08-1

Annotation: Nucleoid-associated protein NdpA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 335 PF04245: NA37" amino acids 7 to 327 (321 residues), 300.3 bits, see alignment E=9.7e-94

Best Hits

Swiss-Prot: 91% identical to NDPA_PSEMY: Nucleoid-associated protein Pmen_3549 (Pmen_3549) from Pseudomonas mendocina (strain ymp)

KEGG orthology group: K06899, nucleoid-associated protein (inferred from 92% identity to pmk:MDS_3816)

Predicted SEED Role

"Nucleoid-associated protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (335 amino acids)

>OH686_17845 Nucleoid-associated protein NdpA (Pseudomonas sp. S08-1)
MPIRHCIVHLIDKKPDGSPAVLHARDSELAASQAMENLLADLNESYNAKQGKAWGLFHEE
SGAYPFSGWLKAYLDGEQDFTAFSRQAVEQLQKLMEESNLSTGGHVLLAHYQQGMTDYLA
IALLHHSEGVTVTEALDVAPAKHLDLSQLHLAARINISEWRNNANSKQYISFIKGKNGKK
VSDYFRDFIGCQEGVDAPSETRTLLKAFSDFVESEDMAEEQARAKTEALVDYATSQAKIG
EPITLDELSGLIDEDRPRAFFEHIRNKDYGMAPEFPADKRTLNQFRRFTGRAEGLSISFE
AHLLGSKIEYDEARDMLIIRQVPTQLKDQLKRRKD