Protein Info for OH686_16150 in Pseudomonas sp. S08-1

Annotation: Putative integral membrane

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 519 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 49 to 71 (23 residues), see Phobius details amino acids 85 to 105 (21 residues), see Phobius details amino acids 125 to 150 (26 residues), see Phobius details amino acids 156 to 174 (19 residues), see Phobius details amino acids 185 to 203 (19 residues), see Phobius details amino acids 215 to 233 (19 residues), see Phobius details PF03741: TerC" amino acids 16 to 205 (190 residues), 154.4 bits, see alignment E=4.3e-49 PF00571: CBS" amino acids 385 to 425 (41 residues), 26 bits, see alignment 1.4e-09 PF03471: CorC_HlyC" amino acids 444 to 516 (73 residues), 57.7 bits, see alignment E=1.5e-19

Best Hits

KEGG orthology group: None (inferred from 81% identity to pfv:Psefu_3975)

Predicted SEED Role

"Magnesium and cobalt efflux protein CorC" in subsystem Copper homeostasis: copper tolerance or Phosphate metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (519 amino acids)

>OH686_16150 Putative integral membrane (Pseudomonas sp. S08-1)
MIFEWMADPTAWLGLLTLIVLEIVLGIDNLVFIAILADKLPPHLRDRARLIGLSLALIMR
LGLLASISWLVTLTEPLIEVFGKSFSGRDLIMLFGGVFLLFKATMELHERLEGRTHQPGG
SRTYALFWPVVAQIVVLDAVFSLDAVITAVGMVEHLEVMMIAVIVSIGLMIVASKPLTAF
VNAHPTVIMLCLGFLMMIGFSLTAEGLGFHIPKGYLYAAIGFSILIEAANQLVRHKRKRQ
LQDGRGLRERTAHAVLRLLGGKVEADEVGEEIADMLEGGAGEAALFDRRERVMIRGVLGL
AEQSIKTVMTDRMQVDHIDLAHAPEQIRQALLESPHSRLLVIRGGQVDEPLGFVHKKELL
KELLQDQQPDIESLLRRPLNLPDSCAVLGALEQMREAQAHVAFVVNEFGGFVGLLTLTDI
LEAIAGELPDASEVDGPDIEPAGAGFRVSGALNLALLRSRIGLQAQATEDYQTLAGLVMS
LLDRLPVVGDEVRYAGWCMRVDEVHERRVSRLLLTPEPQ