Protein Info for OH686_15965 in Pseudomonas sp. S08-1

Annotation: Protein containing domains DUF404, DUF407, DUF403

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 830 PF14403: CP_ATPgrasp_2" amino acids 81 to 459 (379 residues), 508.1 bits, see alignment E=2.2e-156 PF04174: CP_ATPgrasp_1" amino acids 81 to 412 (332 residues), 364.3 bits, see alignment E=8.4e-113 PF04168: Alpha-E" amino acids 509 to 818 (310 residues), 218.1 bits, see alignment E=3.5e-68

Best Hits

KEGG orthology group: None (inferred from 83% identity to pmy:Pmen_0656)

Predicted SEED Role

"Protein containing domains DUF404, DUF407, DUF403"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (830 amino acids)

>OH686_15965 Protein containing domains DUF404, DUF407, DUF403 (Pseudomonas sp. S08-1)
MPDLLADYPRADAAYHELLDAQGQVRPHWRRLFDQLQRSTPAQLQQRQALLARQIQENGV
TYNVYADPDGADRPWELDLLPNLIPAEEWQQIAAGVAQRAGLLNAVLADLYGPQQLLAEG
LLPTELVFGHDNFLWPCQGIRPPGGTFLHLYAVDLARAPDGRWWVTADRTQAPSGAGYAL
ENRQILSRAFPELYRDLRVQYLAGFFRTLQDTLARQAPAAGETPLVVLLTPGRFNESYFE
HLYLARQLGYPLVEGSDLTVRDAKLYLKTLAGLRRVHAVLRRLDDDYCDPLELRTDSALG
VPGLLEAVRQGNVLVANALGSGVLESPGLPGFLPAIAEKWLGEELLLPSIASWWCGEDPV
LEEALGKLDELLVRPSFPSQSFVAQFGRDLDEAQRAALAERIQARPYAYVAQARAQLSQA
PVWLAEEGGVVPRAIGMRVYAVASADGYRVLPGGLTRVAADADAEVVSMQRGGASKDTWV
LGERHPGGEPWQWLRPLGVADLVRSDPYLPSRVVENLFWFGRYGERCEDSARLLRIMLAR
YVDDDDDPQALQAALSLGESLGLLPDAGSGSLEQRLFEALLGADWPTSLRANLQRLQWAA
GSVRGKLSQANWQALVELQREAQGLEREGADFGDLLDFLNRLLMSLAALAGFALDDMTRD
DGWRFLMLGRCVERLQFLCESVAGFLRSHAVHDQSALEWLLELGNSSITYRTRYLASAQL
IPVLDLLLLDEQNPHAVLFQLRQLLRSLERLEEGFGFVAGNRLGELASKLASFRLSSLES
PLFGTSGVRAVLGGLADLLLQIGEASGEVSDQLALRFFVHVDASRGTLSS