Protein Info for OH686_15675 in Pseudomonas sp. S08-1

Annotation: thioredoxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 PF00085: Thioredoxin" amino acids 14 to 110 (97 residues), 98.2 bits, see alignment E=1e-31 TIGR01068: thioredoxin" amino acids 16 to 111 (96 residues), 107.4 bits, see alignment E=1.8e-35 PF13098: Thioredoxin_2" amino acids 26 to 109 (84 residues), 35.4 bits, see alignment E=4.6e-12 PF13432: TPR_16" amino acids 125 to 178 (54 residues), 28.2 bits, see alignment E=8.8e-10 PF14559: TPR_19" amino acids 130 to 196 (67 residues), 47.9 bits, see alignment E=5.4e-16 PF14561: TPR_20" amino acids 201 to 290 (90 residues), 92.2 bits, see alignment E=8.3e-30

Best Hits

KEGG orthology group: K05838, putative thioredoxin (inferred from 88% identity to pmy:Pmen_3861)

Predicted SEED Role

"FIG000875: Thioredoxin domain-containing protein EC-YbbN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (290 amino acids)

>OH686_15675 thioredoxin (Pseudomonas sp. S08-1)
MSDTPYIFDVSGAASFEQLVIENSFHKPVLVDFWAEWCAPCKALMPMLAKIAEEYRGELL
LAKVDCDAEQEIVSRFGIRSLPTVVLFKNGQPVDGFAGAQPESAIREMLKPHVAEPAPLA
ADPLETAQALFAEERFGEAETLLKQVLTENNENAAALILYARCLAERGELGEAETELGAV
KGDEHKQALAGAKAQLTFLRQAASLPDAADLKSRLAQHPDDDEASYHLAVQQLARQQYEA
ALEGLLKLFVRNRSFQEGLPHKTLLQVFDLLGGDHPLVTAYRRKLYQAIY