Protein Info for OH686_15525 in Pseudomonas sp. S08-1

Annotation: Two-component system sensor histidine kinase/response regulator hybrid

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 378 TIGR00229: PAS domain S-box protein" amino acids 15 to 136 (122 residues), 69.5 bits, see alignment E=1.4e-23 PF00989: PAS" amino acids 18 to 120 (103 residues), 43.6 bits, see alignment E=6.9e-15 PF08448: PAS_4" amino acids 28 to 133 (106 residues), 52.6 bits, see alignment E=1.3e-17 PF13426: PAS_9" amino acids 28 to 130 (103 residues), 45.2 bits, see alignment E=2.4e-15 PF00512: HisKA" amino acids 154 to 216 (63 residues), 40 bits, see alignment E=8.2e-14 PF02518: HATPase_c" amino acids 260 to 376 (117 residues), 81.6 bits, see alignment E=1.4e-26

Best Hits

KEGG orthology group: None (inferred from 60% identity to pfv:Psefu_1675)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (378 amino acids)

>OH686_15525 Two-component system sensor histidine kinase/response regulator hybrid (Pseudomonas sp. S08-1)
MADEPPLIPSGLTERSYELLVQAVVDYAIYMLDPQGRIMTWNVGAERIKGYKASEVIGQH
LELFFPEEDRLQGKAQRLIATALREGRAHDEGWRVRKDGSRLWALTVLDAIHDEAGCLIG
LAKITRDMTERHEAQLHLDEVRAQLFQAQKMEALGQLTGGMAHDFNNLLTVIIGSSDLAR
RSNNLERIQLLLENIHEAGVRGRELTQNLLTFARRRTPQDWALDLASTLQASSALFAQAL
PKGLSLELEIAPALHQARVDANQLEMALLNLVFNARDAMEQQGGRILLRAENQRLAGEWE
DLHGDFVLISVSDDGPGIAPELQERIFEPFFTTKQFGKGTGLGLSQVYGFARNAGGAVRV
ESAPGKGTRMTICLPAAL