Protein Info for OH686_15180 in Pseudomonas sp. S08-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 332 transmembrane" amino acids 183 to 204 (22 residues), see Phobius details amino acids 210 to 232 (23 residues), see Phobius details amino acids 243 to 264 (22 residues), see Phobius details amino acids 284 to 306 (23 residues), see Phobius details PF05656: DUF805" amino acids 172 to 277 (106 residues), 79.8 bits, see alignment E=1e-26

Best Hits

KEGG orthology group: None (inferred from 64% identity to pmk:MDS_4321)

Predicted SEED Role

"FIG00954311: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (332 amino acids)

>OH686_15180 hypothetical protein (Pseudomonas sp. S08-1)
MTDTRYKIVFDGQLMPEMTLDTVKDNLARLFKSDQSKIDALFSGSPVALKRDLAEAEADK
YLAALQQAGALVRKEQEGGSLGLSLVDSEPAITAPATPQLPTNGMACPKCGHQQEKAAEC
SACGIIIERYLARQAALPATSAPAAMESASPYSTPKSEVGDAMPEYGELKVFTVNGRIGR
VRYLGWSMALMLIALLGYGIAAGAMAVSPIVGGILMIPLVIGGVVVSVMIGVQRLHDIGW
SGWLWLLNFVPVVGSVFALLMLVIPGTQGANRYGPPPPPNSGGVIALAWSLLLVPILGIL
AAISIPAYQEYVDRAEQAQQEQQLQYAPEGEE