Protein Info for OH686_14760 in Pseudomonas sp. S08-1

Annotation: MSHA biogenesis protein MshQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1378 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF20419: DUF6701" amino acids 772 to 1375 (604 residues), 361.6 bits, see alignment E=5.8e-112

Best Hits

Predicted SEED Role

"MSHA biogenesis protein MshQ" in subsystem Mannose-sensitive hemagglutinin type 4 pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1378 amino acids)

>OH686_14760 MSHA biogenesis protein MshQ (Pseudomonas sp. S08-1)
MHKALHYCVLVLSLLASGLAQAVTYTFRNSDTFPSPTSPAICSGSWSKSGSTFTCSGNLT
LASGDVLAVRTAGGEALDDITVIATGTISLTSNTVGTSSKSISLRTTSGNLSSTGNTTIN
GGVRSDSGAINLNGADLNGSLQSSSGSITLVDTSVSGTLTSSGPNNLTTSSIAGAASISG
TLTTSSATFGSTLTTTGTTTLSGGSVTGAAQINAALDATGTSFGGNVTTTGAGTFSGGSV
GGNLQSSGNITSTNGTVFNGTLTSTNGAVSLTGGSVTGLVRSGCCQVTTNGTNLAGGARS
DSSGISITGGTIAGAFYANNNAATFSGVTMTSGTVSGASTVTFTDSSLGSAESKVTVTSV
SGAVSLNNTTAFGDFTAPNYSTINVNSPSTVTGTCLPNSTPANACNASVTPVCFTDNFNR
SSLGSDDWVVTSRSGSFGTPRIVNNRLRLTDSSTNVATAATLQRLLPANSNYVQVQFTYN
AYGGNGADGVAVVFSDASITPQPGAFGGPLGYGTKGTSDTTGFAGGWLGVGIDEYGNFSN
EGGPGSVGARQDSVAMRGSGSGTTGYRYLTGTGTLTPGIDVSGSTAGPAHIYRITLDSTV
PGKTMARLERKVGTGSFATLIPSFDVRAATNQAGIPSDFYLSLTGSTGSAYNIHELDDLQ
ICASKMNSIGAQVDHFEYVYSGSALTCNPQTVTIKACQNTSCSTLYTDPVSVTLTPTAGW
TANAPATMAGGNVITFSGGTATAQLRSGAGDVVVGESSSVPSVRPFSQRVCSTSGCRITF
ADTGFLITVPDLIAGKEAEATIQAVRKSDNAAVCVPSFDRVTRDVRLNATYSDPTTGTKL
VVINGTVITTTTVAAAASATPTTFSLYFDDKSMVSPKPKVRYNDAGLMRLNASLVDSPAN
PVIAGTGQFVSRPYGLCILTGSQAGTDYSASSPVLANVRAGDLFNVQFRPVIWTSQTDAS
PPLMADNICWDKNVPPNPIEGTPNYQQTAVPLALTILEPAGGRVADIFGADTALQDPYKY
EHLRASSSTPDAPTTIARSIDEVGVFRLTATPPTYLGASMSHAVSQSGRVGRFIPAYLEL
SGDAALTPSCGLFSYQGQAISFAANQQPRLTVTGYSRLKHVTQNYDRGAFWRLPTPARDN
YVSVISNRSGLNARLTQQGTLTTSVIDNTVGDGLKIFSWAGEQLVYGLTNPASLPDGNDY
PVAAAVRQGFSIEALKDADGACYMADSTVCSAYSFDFGGSDIRLGRLRIGNASGSELQSL
SLPVTLESWQNIAGGSFQVEAGDTCTLLGAATLDRHNGNLGVGETTPTTGQLAAGRWNIS
LSAPGVGNDGSVQASFPTASTWLRYPWDGVSRTEARGLASFGTYKGATPLIFRRELYR