Protein Info for OH686_14495 in Pseudomonas sp. S08-1

Annotation: ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 230 transmembrane" amino acids 12 to 39 (28 residues), see Phobius details amino acids 65 to 83 (19 residues), see Phobius details amino acids 96 to 119 (24 residues), see Phobius details amino acids 144 to 165 (22 residues), see Phobius details amino acids 195 to 218 (24 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 10 to 117 (108 residues), 66.1 bits, see alignment E=1.6e-22 PF00528: BPD_transp_1" amino acids 31 to 223 (193 residues), 83.7 bits, see alignment E=6.9e-28

Best Hits

Swiss-Prot: 42% identical to OCCQ_RHIML: Octopine transport system permease protein OccQ (occQ) from Rhizobium meliloti

KEGG orthology group: K02029, polar amino acid transport system permease protein (inferred from 88% identity to pmy:Pmen_4271)

Predicted SEED Role

"Arginine ABC transporter, permease protein ArtQ" in subsystem Arginine and Ornithine Degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (230 amino acids)

>OH686_14495 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) (Pseudomonas sp. S08-1)
MTLDLHGFGPALAAGTLVTIQLALSALALGLVLGLLGALAKTSPNKFLQGLGGIYSTIVR
GVPELLWVLLIYFGTVQGLAALGEFLGVGSLELNPFAAGTIALGLCFGAYATEVFRGAIL
AIPKGHREAGMALGMSKGRILWKLILPQMWRIALPGLGNLFMILMKDTALVSVIGLEEIM
RRSQIAVTSSKQAFTFYMVAAFIYLGLTVIAMIGMHFLEKRASRGFVRST