Protein Info for OH686_13280 in Pseudomonas sp. S08-1

Annotation: Probable AGCS sodium/alanine/glycine symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 482 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 59 to 83 (25 residues), see Phobius details amino acids 89 to 110 (22 residues), see Phobius details amino acids 137 to 155 (19 residues), see Phobius details amino acids 174 to 192 (19 residues), see Phobius details amino acids 203 to 224 (22 residues), see Phobius details amino acids 233 to 255 (23 residues), see Phobius details amino acids 291 to 315 (25 residues), see Phobius details amino acids 339 to 361 (23 residues), see Phobius details amino acids 378 to 403 (26 residues), see Phobius details amino acids 405 to 426 (22 residues), see Phobius details TIGR00835: amino acid carrier protein" amino acids 14 to 432 (419 residues), 466.7 bits, see alignment E=3.5e-144 PF01235: Na_Ala_symp" amino acids 49 to 445 (397 residues), 498.8 bits, see alignment E=7.5e-154

Best Hits

Swiss-Prot: 47% identical to GLNT_BACSU: Probable sodium/glutamine symporter GlnT (glnT) from Bacillus subtilis (strain 168)

KEGG orthology group: K03310, alanine or glycine:cation symporter, AGCS family (inferred from 88% identity to pfv:Psefu_4399)

Predicted SEED Role

"Probable AGCS sodium/alanine/glycine symporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (482 amino acids)

>OH686_13280 Probable AGCS sodium/alanine/glycine symporter (Pseudomonas sp. S08-1)
MLEMLNDFLSGKLLIVLIVGLGSYFTLRSRFVQFRHFGHMFSVFKESIRGSAGQLSSFQA
LMLSLAGRVGAGNIAGVGVAVTLGGPGAVFWMWVTALVGMSSSFFECTLAQAYKRADGDG
LYRGGPAYYIQHGLKLRWMALTFAVLLLVTYGFAFNGLQSFTVTHSLQNAFGFPVQYTGL
ALAVLLGLVFLGGIKRIAAVSDLLVPVKTLAYIAVTLYVIASQIELVPDMLVTIVKSAFG
LEPAFAGLLGSAIVMGVKRGVFANEAGLGSAPNVAAVAAVKHPVAQGVVQAFSVFLDTFV
ICTCTALLILLSGFYTPGFEGDGIILTQNSLAAVVGDWGRIFVSVALSLFVFTCILYNYY
LGENALQFLVGRGRGPLMIYRGLVLALIFWGSMQNLGTVFAFADITMTLLALVNLAALAM
LIKVGLRLMRDYDAQRKAGIETPVFDPKEFGDLDLDPVAWPANPQPAATGEHVAMAHSLH
QR