Protein Info for OH686_12910 in Pseudomonas sp. S08-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 586 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF06980: DUF1302" amino acids 9 to 586 (578 residues), 503.4 bits, see alignment E=5.2e-155

Best Hits

Predicted SEED Role

"FIG067310: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (586 amino acids)

>OH686_12910 hypothetical protein (Pseudomonas sp. S08-1)
MAYQGRGLAVAGLALLGALPVGMAQAFQVRSGDWTTSLDTTVSYGVSYRMEGQDDKLIAR
ANGGSGSNAGLINSDDGNLNFRKGDLFSEMVKVVSEMDLRYQERHGLFIRGRAFYDFELE
DDSRRHREISDGGLDEAGSSIDLLDAFVYGSWTVNERDLNARLGRQVINWGEGLFYQNGI
GATNPVDINALRAPGSEVKEAYMPTFMVYGSYELRDNLTLEGYWQPGKAWEASKIDPCGT
YFSTLDPLGEDCEYLSASPLQEQATGLAGPAMAFDSPEAAQAYADSLGPGLVNGLLRAYL
PTTFIPRAQDIDGDDSAQYGLALRWYVPELNDTELGFYYLRYNMQVPMIGLTVGQPVILP
VVGALPNASSSRYYAEYLEKRDLFGISFNTSIGGDSIFNGLSLAGELSYRPDTPIALGLN
EYLPIALLNPQGLPTGTHIDGYREKDMFQASLAAIYNFNGLLGSDSAALFSELVASRVQG
LESDVDYYEATSSAYGAQASLQLTYPNVFNLVNLVPSLGYQYSINGVSPQLTNGLDEEAQ
SWSVGLDAIYQESLTVGAKYVGYSGGGISNKRTDRDYLTFNVKYSF