Protein Info for OH686_12515 in Pseudomonas sp. S08-1

Annotation: peptide deformylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF01327: Pep_deformylase
  • amino acids 4 to 153 (150 residues), 191.5 bits, E=3.6e-61
• TIGR00079: peptide deformylase
  • amino acids 4 to 161 (158 residues), 191.6 bits, E=3.3e-61

Best Hits

Swiss-Prot: 92% identical to DEF_PSEMY: Peptide deformylase (def) from Pseudomonas mendocina (strain ymp)

KEGG orthology group: K01462, peptide deformylase [EC: 3.5.1.88] (inferred from 90% identity to pfl:PFL_0022)

MetaCyc: 56% identical to peptide deformylase (Escherichia coli K-12 substr. MG1655)
Peptide deformylase. [EC: 3.5.1.88]

Predicted SEED Role

"Peptide deformylase (EC 3.5.1.88)" in subsystem Bacterial RNA-metabolizing Zn-dependent hydrolases or Conserved gene cluster associated with Met-tRNA formyltransferase (EC 3.5.1.88)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.5.1.88

Protein Sequence (168 amino acids)

>OH686_12515 peptide deformylase (Pseudomonas sp. S08-1)
MAILNILEFPDPRLRTIAKPVTVFDAALSQLIDDMFETMYAAPGIGLAATQINVHKRVVV
MDLSEDKSEPRVFINPEFESLTEEMDQYQEGCLSVPGFYENVDRPQKVKIKAQDRDGKPY
ELIAEGLLAVCIQHECDHLNGKLFVDYLSNLKRDRIKKKLEKQHRQQA