Protein Info for OH686_12125 in Pseudomonas sp. S08-1

Annotation: Gate supefamily SpmA/SpmB domains protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 408 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details transmembrane" amino acids 44 to 63 (20 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details amino acids 171 to 192 (22 residues), see Phobius details amino acids 202 to 226 (25 residues), see Phobius details amino acids 232 to 254 (23 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details amino acids 351 to 373 (23 residues), see Phobius details amino acids 385 to 407 (23 residues), see Phobius details PF07670: Gate" amino acids 49 to 157 (109 residues), 35.7 bits, see alignment E=5e-13 amino acids 275 to 378 (104 residues), 44.3 bits, see alignment E=1.1e-15

Best Hits

KEGG orthology group: None (inferred from 81% identity to pae:PA5478)

Predicted SEED Role

"Fused spore maturation proteins A and B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (408 amino acids)

>OH686_12125 Gate supefamily SpmA/SpmB domains protein (Pseudomonas sp. S08-1)
MLNGLWLGFFVVAALAALVRWIGGDATVWASMVESLFTMAKTSVDVMILLFGTLTLWLGF
LRIAEKAGLVEVLARLLGPLFARLMPDVPRGHHSLGLVTLSFTANGLGLDNAATPIGLRA
MKALQELNPNPTSATNAQVLFMVMNASSFVLLPVSIFMYRAQQGAEDPALVFLPILLANA
VSTLSALLAVGVMQRLRLWDPVLLAWFGGAALLIGGFMAVLAGLSATALTALSSLLGNLT
LFGLILCFLLLGALKRVPVYESFVEGAKEGFEVAKNLLPYLVAMLCAVGVLRASGALDVL
LDGIRWCVEGLGWDSRFVEALPTGLVKPFSGSAARAMLIETMQTQGVDSFPALIAATMQG
STETTFYVLAVYFGSVGIQRARHAVGCALFADLVGVIASILICYWFFG