Protein Info for OH686_11750 in Pseudomonas sp. S08-1

Annotation: type II secretion system protein L

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 369 transmembrane" amino acids 216 to 241 (26 residues), see Phobius details TIGR01709: type II secretion system protein L" amino acids 19 to 366 (348 residues), 200.8 bits, see alignment E=1.9e-63 PF05134: T2SSL" amino acids 31 to 192 (162 residues), 96.9 bits, see alignment E=1.2e-31 PF12693: GspL_C" amino acids 214 to 366 (153 residues), 120.6 bits, see alignment E=6e-39

Best Hits

Predicted SEED Role

"General secretion pathway protein L"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (369 amino acids)

>OH686_11750 type II secretion system protein L (Pseudomonas sp. S08-1)
MTDCLFLGPECGGEMADDCQVHWLREDGECLRLGLAECADQLQGRAIVLVLPVEAVSAFL
VELPTAKDRWVRQALPFAVEEMLAEDVELFHLALGKQQSDQRYRVVAVRRGLLAGWLARM
RELDLEVAAVHVDADMLPLDAGGQALLLGERGLLGGNCELRMAFAAEQWAEMQGMEPQWT
LLESSAPYQLLAAGRADATDLAQGEFARRTDNQAWAIWRPAAILLGIGLFLHLSFNLFQA
LYYERQADHFAQSSMELYKKLFPEDRRIINLKAQFAEHLKAGSQSSGGFISLMETASAAM
AKDKGSISVAQIDYSQNRGDLALQVKAGDFAEVEKLRQRLVDSGLAVQLGSANREEDGVS
ARVILGGAQ