Protein Info for OH686_11660 in Pseudomonas sp. S08-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 322 transmembrane" amino acids 33 to 49 (17 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 46 to 158 (113 residues), 34.5 bits, see alignment E=2e-12 PF08447: PAS_3" amino acids 56 to 129 (74 residues), 58.9 bits, see alignment E=4.8e-20 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 158 to 319 (162 residues), 146.1 bits, see alignment E=8e-47 PF00990: GGDEF" amino acids 162 to 317 (156 residues), 153 bits, see alignment E=6.2e-49

Best Hits

KEGG orthology group: None (inferred from 71% identity to pmy:Pmen_4307)

Predicted SEED Role

"Sensory box/GGDEF family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (322 amino acids)

>OH686_11660 hypothetical protein (Pseudomonas sp. S08-1)
MDDNEQAPSELETLTLALLHSRGEVERLRERELLVSSLLAGLNAVLWAFDWEQQKVVYVS
PAYEQIFGRSAALLLADYNEWLNSIYPDDMEYAAQSLASVLEVGSVEQREYRIIRGDGEV
RWLSDKCFISPPNLFDGQTLIVGIAEDITEKKVLQSELHRLATSDVLTGASNRRHFFDQA
GTLFDEAVANGRPLSFLLLDIDDFKKINDGHGHQMGDRVLQRVAHCGAYVVRRDDLFGRI
GGEEFAIVFPGCDSEQARQVAERLQREVQRLQFHNDGESFGVTISQGITSLREGDELEDL
YARADAAMYQAKRQGKDCIVLG