Protein Info for OH686_11100 in Pseudomonas sp. S08-1

Annotation: Transcription accessory protein (S1 RNA-binding domain)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 778 PF09371: Tex_N" amino acids 8 to 191 (184 residues), 236.8 bits, see alignment E=5.1e-74 PF16921: Tex_YqgF" amino acids 324 to 449 (126 residues), 180.7 bits, see alignment E=5.2e-57 PF14635: HHH_7" amino acids 462 to 554 (93 residues), 30.4 bits, see alignment E=1.5e-10 PF12836: HHH_3" amino acids 489 to 553 (65 residues), 102.9 bits, see alignment E=2.9e-33 PF03934: T2SSK" amino acids 494 to 543 (50 residues), 25.9 bits, see alignment 3.6e-09 PF17674: HHH_9" amino acids 559 to 628 (70 residues), 89 bits, see alignment E=1e-28 PF00575: S1" amino acids 647 to 718 (72 residues), 73.8 bits, see alignment E=4e-24

Best Hits

Swiss-Prot: 63% identical to TEX_BORPE: Protein tex (tex) from Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)

KEGG orthology group: K06959, uncharacterized protein (inferred from 89% identity to pmk:MDS_0417)

Predicted SEED Role

"Transcription accessory protein (S1 RNA-binding domain)" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (778 amino acids)

>OH686_11100 Transcription accessory protein (S1 RNA-binding domain) (Pseudomonas sp. S08-1)
MDSINKRIAAELGVLPQQVAAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRY
LRELDERRAAILASIEEQGKLTPELTREINEADTKTRLEDLYLPYKQKRRTKGQIALEAG
LGELADGLFNDPTLNPEEQAARFVDAEKGFADVKAVLEGAKYILMERFAEDASLLDKLRS
FLKHEATLSARVVAGKEAEGAKFSDYFEHDEALKGVPSHRALAIFRGRNEGILGASLKVG
DEAPGTMHPCELMIAERFGIEQRGRAADRWLGEVVRWTWKVKLYTHLETDLLGELREKAE
DEAITVFARNLHDLLLAAPAGPRATLALDPGLRTGCKVAVVDATGKVLETATVYPHAPRN
DWDGTLAILAKLCAKHAVDLISIGNGTASRETDKLAIDLIKKLPALKLTKVMVSEAGASV
YSASELAAREFPDMDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARS
LDAVVEDCVNAVGVDVNTASAALLARISGLNSTLAQNIVQFRDANGAFKSRSELKKVPRL
GDKTFEQAAGFLRVMNGDNPLDASAVHPETYPLVQRIAADTGRDVRSLLGDSSFLRSLDP
KRFTDETFGLPTVTDILKELDKPGRDPRPEFKTAEFQEGVESLKDLQPGMILEGVVTNVT
NFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLTMRMS
DTPGEKVDGPRGGQSRGGQSRGNGGNQPRSERHSSQDKPAPANAAMASLFANAKQLRK