Protein Info for OH686_10305 in Pseudomonas sp. S08-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1198 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 182 to 202 (21 residues), see Phobius details amino acids 213 to 231 (19 residues), see Phobius details amino acids 237 to 258 (22 residues), see Phobius details amino acids 270 to 301 (32 residues), see Phobius details amino acids 315 to 334 (20 residues), see Phobius details amino acids 339 to 358 (20 residues), see Phobius details amino acids 369 to 387 (19 residues), see Phobius details amino acids 414 to 434 (21 residues), see Phobius details amino acids 440 to 459 (20 residues), see Phobius details amino acids 465 to 485 (21 residues), see Phobius details amino acids 491 to 508 (18 residues), see Phobius details amino acids 519 to 538 (20 residues), see Phobius details amino acids 547 to 566 (20 residues), see Phobius details amino acids 582 to 600 (19 residues), see Phobius details amino acids 606 to 622 (17 residues), see Phobius details amino acids 629 to 648 (20 residues), see Phobius details amino acids 663 to 683 (21 residues), see Phobius details amino acids 695 to 717 (23 residues), see Phobius details amino acids 723 to 740 (18 residues), see Phobius details amino acids 748 to 771 (24 residues), see Phobius details amino acids 783 to 802 (20 residues), see Phobius details amino acids 822 to 840 (19 residues), see Phobius details amino acids 845 to 846 (2 residues), see Phobius details amino acids 850 to 870 (21 residues), see Phobius details amino acids 877 to 896 (20 residues), see Phobius details amino acids 903 to 922 (20 residues), see Phobius details amino acids 938 to 958 (21 residues), see Phobius details amino acids 970 to 990 (21 residues), see Phobius details amino acids 1002 to 1021 (20 residues), see Phobius details amino acids 1039 to 1059 (21 residues), see Phobius details amino acids 1071 to 1092 (22 residues), see Phobius details amino acids 1109 to 1129 (21 residues), see Phobius details amino acids 1138 to 1155 (18 residues), see Phobius details amino acids 1167 to 1185 (19 residues), see Phobius details PF10101: DUF2339" amino acids 179 to 532 (354 residues), 331.7 bits, see alignment E=6.2e-103 amino acids 826 to 1187 (362 residues), 167 bits, see alignment E=4e-53

Best Hits

KEGG orthology group: None (inferred from 68% identity to pmk:MDS_0542)

Predicted SEED Role

"FIG00955932: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1198 amino acids)

>OH686_10305 hypothetical protein (Pseudomonas sp. S08-1)
MQWIFMLVGLVLGALAGESITSALLGGLLGLGLGQALRLQQLAADNERLRKELKGFAERF
EHGTTALYERLFRLESATPSTAAPVAEQPAAVAAAAAPEVDPPAEPEVEPESAELVWELP
EQLSPAPQAAAEAPRPMPAQVAPLPQLPPRPSEPRRPAAPREPSPIERGFALAKAWLLGG
NTVLRVGVVLLFLGLAFLLRYATEGMVVPVELRYAGVAASAIALLGLGWWLRRRNPSYGL
MLQGTGIAVLYLTVFAAMRLHPLLDPKLGLGLLVLVTAFSAILAVAQNALGLAVAAALGG
FAAPILTSTGSGNHVALFSYFILLNAGIFAIAWFKAWRLLNLVGFVGTFGIGFAWGIRSY
TPELLWSTEPFLVLFFLMYVAIGLLFARRKLREAADAPEGRDELLRWARGRADYVDGTVL
FGPPLVGFGLQYAIVQHLEFAAAFSALGLGLFYMVLARLLRGRSVLLLMETCLALGVVFA
TLAIPLGLDARWTSAAWAVEGAGIYWLGLRQGRPLARSFALFLQFAAALAFLGGIDFSIP
SDTVLDGAPLGALMLGVALLFSFWQLRQAPDDVSRAWERRGLPLLATAGLGFLYLIAPLC
LGPEGTAIAWALAGLATLFAGLRLQSRTFLFSAFAIQLLGGVLFLTRLRGADADGAGVLD
SGWRGLMVCSLIGLALVAGMLIAVRDKLVSEDRGLMRGLSLVMLVGLLFVNLAVLFVLPW
QSAAAVWAGTGLLIIWLSLRLQLRASFLFGLLLQVVGGIAFLAASPLLLGYLPREGLRPL
AHAGFWAPLVLALAAQVGAWRLRHVLLRQQAGSLGSLSLQRLSQLLLAWGAAWWALALSS
EVLRFVAIDLQGAALLALAALSVALWSWLAGRLRWRALVLLCSLLVPAGLVILLHLGERT
YHPAAGFGWLGWGLLFAVHLSSLRRLAELLPAGVRSAAHVLGCWLILGVLALELRYLLML
LAEHYNAWRWLGWAVLPSAFLLALAAPRAWPWPVAAYPREYRVLAAAPLALLMLGWLWLA
NIASDGSADPLPYLPLLNPLELGMLLVLLAIYAWLRAGLPQLGLAAHSERIAQGVAGATL
FVVLTATVFRAAHHWGGVPYELDVLLDSMLVQAGLSIVWTLIALPLMIVGHLRARRELWL
LGAALIAVVVAKLFFVELGNRGGLERIISFIGVGVLLLVVGYFAPLPPRKAESAQVNT