Protein Info for OH686_10050 in Pseudomonas sp. S08-1

Annotation: Type IV pilus biogenesis protein PilM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 TIGR01175: type IV pilus assembly protein PilM" amino acids 8 to 353 (346 residues), 479.8 bits, see alignment E=2.3e-148 PF11104: PilM_2" amino acids 14 to 353 (340 residues), 461 bits, see alignment E=2.2e-142 PF14450: FtsA" amino acids 196 to 321 (126 residues), 46 bits, see alignment E=6.8e-16

Best Hits

KEGG orthology group: K02662, type IV pilus assembly protein PilM (inferred from 94% identity to pmy:Pmen_0542)

Predicted SEED Role

"Type IV pilus biogenesis protein PilM" in subsystem Type IV pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (354 amino acids)

>OH686_10050 Type IV pilus biogenesis protein PilM (Pseudomonas sp. S08-1)
MLGLFNKKANTLLGIDISSTSVKLLELSRSGSRYKVEAYAVEPLPPNAVVEKNIAELEGV
GQALSRVLSKAKTGVRTVAVAVAGSAVITKTIEMEAGLNDDELENQLKIEADQYIPYPLE
EVAIDFEVQGVSARNPERVEVLLAACRKENVEVREAALGLSGLTAKVVDVEAYALERAYS
LLESQLGGRTDELTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSV
EEAGLAKKQGGLPDDYESEVLQPFKEAVVQQVSRSLQFFFAAGQFNDVDYILLAGGTASI
PDLDRLIQQKIGTPTLVANPFADMALGGKVNAGALASDAPSLMIACGLAMRSFD