Protein Info for OH686_08200 in Pseudomonas sp. S08-1

Annotation: AmpG permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 536 signal peptide" amino acids 12 to 19 (8 residues), see Phobius details transmembrane" amino acids 20 to 33 (14 residues), see Phobius details amino acids 52 to 69 (18 residues), see Phobius details amino acids 90 to 107 (18 residues), see Phobius details amino acids 113 to 135 (23 residues), see Phobius details amino acids 156 to 177 (22 residues), see Phobius details amino acids 189 to 210 (22 residues), see Phobius details amino acids 231 to 253 (23 residues), see Phobius details amino acids 276 to 295 (20 residues), see Phobius details amino acids 317 to 342 (26 residues), see Phobius details amino acids 358 to 376 (19 residues), see Phobius details amino acids 383 to 407 (25 residues), see Phobius details amino acids 429 to 455 (27 residues), see Phobius details amino acids 467 to 487 (21 residues), see Phobius details amino acids 493 to 514 (22 residues), see Phobius details PF13000: Acatn" amino acids 21 to 105 (85 residues), 30.2 bits, see alignment E=1.8e-11 PF07690: MFS_1" amino acids 21 to 404 (384 residues), 44 bits, see alignment E=1.5e-15 TIGR00901: AmpG-like permease" amino acids 29 to 476 (448 residues), 420.5 bits, see alignment E=3.2e-130

Best Hits

Predicted SEED Role

"AmpG permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (536 amino acids)

>OH686_08200 AmpG permease (Pseudomonas sp. S08-1)
MPRRTWRAALATYAHPATLALLLLGFAAGLPYMLVFSTLSVWLREAGVTHQTIGYASLIG
LAYAFKWVWAPMLDQWRLPLLSRLGRRRSWLVLSQGLVAFGLIGMALCDPQQHLSWLIGV
AVVVAFASATQDIAVDAYRLEIVDDTRQAALAASYMAGYRVAALLATAGALYFAGWFGNP
GAGYQHGAWASTYLLFAMLMLPGVITTLWMREPPVPLQTQMAAARYGLYRQLASVLVLIV
LLVSVPAMFTQFFRSDILLLFSDEIGLGELLREDRATLRFLLYTILTAVCLSRMGRRGLA
PVLTPVNDFILRYRWQALLLLGLIATYRMSDTVMGVMANVFYIDMGFAKSQIASVSKLFG
LIMTLLGAALGGLLIVRFGILPILLLGGAASAGTNLLFATLSGLGVITDPTSYGQQTVGH
LLQVLDPHMLMLVLTIALDNLSSGLATAAFVAYLSSLTNLKFSATQYALLSSIMLLLPRL
VGGYSGVMVEKAGYAQFFLATALLGIPTLLLIILQWRQQGSQPLPAPSTPAPRSEP