Protein Info for OH686_07425 in Pseudomonas sp. S08-1

Annotation: LysR family transcriptional regulator, regulator for bpeEF and oprC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 307 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00126: HTH_1" amino acids 4 to 63 (60 residues), 68.5 bits, see alignment E=4e-23 PF03466: LysR_substrate" amino acids 88 to 292 (205 residues), 138.9 bits, see alignment E=1.5e-44

Best Hits

Swiss-Prot: 50% identical to YHJC_ECOLI: Uncharacterized HTH-type transcriptional regulator YhjC (yhjC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 64% identity to cja:CJA_3744)

Predicted SEED Role

"Transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (307 amino acids)

>OH686_07425 LysR family transcriptional regulator, regulator for bpeEF and oprC (Pseudomonas sp. S08-1)
MDRLNAMLAFVRVAELASFTRAAESLGQPKASISLQVQQLENQLGARLLHRTTRRVQLTQ
DGQACYERCKDLLADADEIAAMFQLDAGRLRGRLRVDMGQALARDLVLPHLPAFLAEHPN
LELELSCTDHKVDLIREGFDCVVRIGSLVDAALIARPLGLMEQINCASPDYLQRFGRPRS
LADLAAHRLVHYVPTLGMKPIGWEFVEQGETRFLEMPGALTVNSTDAYTQACLAGLGIIQ
VPLAGIRGHLASGRLVEILPEYCAAPMPVSLLYPHRRNLSKRVQVFMDWLSRLVRDYLDG
TDRPAAH