Protein Info for OH686_07190 in Pseudomonas sp. S08-1

Annotation: Methyl-accepting chemotaxis sensor/transducer protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 652 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 298 to 320 (23 residues), see Phobius details PF02743: dCache_1" amino acids 33 to 284 (252 residues), 62.3 bits, see alignment E=5.1e-21 PF00015: MCPsignal" amino acids 470 to 618 (149 residues), 126.8 bits, see alignment E=8.4e-41

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (652 amino acids)

>OH686_07190 Methyl-accepting chemotaxis sensor/transducer protein (Pseudomonas sp. S08-1)
MPLRLKLAISFLMIGLIPVLAMAFTVYQQASQALREQALNGLEAVANIKQQQLQDSWQAR
HNQLAALASNLGTSYAGLDETALLSTANYDRPIFQNFIETFGYRELKLVSRDGHVLFSLQ
RGADYQQQLGDPAWRDTPLGQVVRTALDSGQAEIGDLAVSTPGGEPSQFLAAPIVEEGEL
QLLLVLELPLTELNRVMQARQGLGETGETYLVGADGRLRSDSVRFTEHKVARDGQQGEQL
PGAAIGKALAGQQGRLAEPGLNGQPVLKAFVPLQLDGRRWALVAEMDQEQAFAAVRTLMW
QVVVLVLLTIAGVALATWLVSRSVMRPLGGEPRSMAELARRLAAGELRLSADGGEHSGLM
QALHEMARAWRQVVERLRQASQAVGDASGDILGAAGRTSSSLDQQQEALELVVSAVDQMA
ATVQEIASNASQSADGSAAARDAFVTVQGSLQRMIGQQDQLLAGLRGADQVVQTLASDSQ
QIGSVLEVIRAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLALRTRSATEEIVT
IVAALGESSGEAQARMQGSSEQARALEVETQAVLGSLGHLDDSLQGVHALAFQIAAAAEQ
QAATTQEVNQHMHRLNDMTGENRRTAAHTRDCGEHLRKVAGSQEQLVAQFQL