Protein Info for OH686_06865 in Pseudomonas sp. S08-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 451 transmembrane" amino acids 12 to 28 (17 residues), see Phobius details amino acids 40 to 55 (16 residues), see Phobius details amino acids 66 to 86 (21 residues), see Phobius details amino acids 92 to 109 (18 residues), see Phobius details amino acids 115 to 134 (20 residues), see Phobius details amino acids 179 to 197 (19 residues), see Phobius details amino acids 206 to 226 (21 residues), see Phobius details amino acids 244 to 265 (22 residues), see Phobius details amino acids 277 to 300 (24 residues), see Phobius details PF09721: Exosortase_EpsH" amino acids 16 to 259 (244 residues), 89.7 bits, see alignment E=1.1e-29 TIGR04178: exosortase/archaeosortase family protein" amino acids 172 to 258 (87 residues), 38.1 bits, see alignment E=7.5e-14

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (451 amino acids)

>OH686_06865 hypothetical protein (Pseudomonas sp. S08-1)
MRTDRLPRLPAWLWLLLASAALWPLWLWSARRLSDGSDDPYGIVALGALLLVLWRERTGF
VEAPRLGWLLTAVALAASAELSQGFWPPLPRAALGVLAVLCVAMALRGAGQPRLAWFGLG
LLALPLLSSLQFYLGYPLRVLTAEASVWLLRGGGLVAARQGSVLEVGGQLVMVDAPCSGI
QMAWVAYFTAFATAAWLRLPDRLLLHRIPLLGALVLVGNILRNSLLVLQETGRLGWPGWM
HEGIGLLVFVAVCALVLRIVGAGVWQAAQLPARAPAVAVAGVWQLSVALVFVGLGGWPLL
QGQAEPAQPLVRSHEWPQHFAGRELRPLALSPVELQFAAQFPGAIGRFSDGERIISLRHV
TRPTRKLHPAADCFRGLGYRIGVQALERRIAASGVQRCFVAEGPGGPLRVCEYIEDAAGA
SFSDHSAWYWSALAGESRGPWLAVTTAQPLP