Protein Info for OH686_06370 in Pseudomonas sp. S08-1

Annotation: Methyl-accepting chemotaxis sensor/transducer protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 712 signal peptide" amino acids 1 to 11 (11 residues), see Phobius details transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 359 to 383 (25 residues), see Phobius details PF00672: HAMP" amino acids 382 to 431 (50 residues), 46.5 bits, see alignment 3.7e-16 PF00015: MCPsignal" amino acids 495 to 678 (184 residues), 148.8 bits, see alignment E=1.5e-47

Best Hits

KEGG orthology group: K03406, methyl-accepting chemotaxis protein (inferred from 67% identity to pen:PSEEN0903)

Predicted SEED Role

"Methyl-accepting chemotaxis protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (712 amino acids)

>OH686_06370 Methyl-accepting chemotaxis sensor/transducer protein (Pseudomonas sp. S08-1)
MRFKSIQFSVVVLAGASVLAVVVALVLYALFASSRTQTLVHERTQGLLEQVIDQRLVALA
EAQVGKLQRQFEAPMTLSKSLATLNSQMAPGADGAAKVSLSRDELSTLVGVYLEKNPELI
DLYIGWEPNAFDQDDDLYAGQEAAGYDATGRFMPWWYRDGGQFKVAPLTAVQMESEKLLP
TGVREGEYYLCPKASKQPCVVDPASYDFGGKQVLVSSFNAPILVDGQFKGVVGNDLALDF
IQGLLTSANGELYEGAGELALIAANGTLIAATKDATLVGQPAAKVLDAELLERLKQSSGT
EPILKLDEEQQLFQLLLPFQVAGTSTRWTLAITLPTSAVFADLQQLQAGLAEQANQDTFG
MALVGLLIAALGLLVIWFVGYGIARPLKDMAAMLDDIAKGDGDLTVRLQVDRADELGQIA
SGFNTFLNKLQNMIRDVVTSVQKVSDSSEHTADIAIRTNQGVQRQMAEIDQVATAVHEMT
ATAQDVARNATQAAEAASHADRSANDGKRIVEGTAKAISALAGEIGRAVSVVQTLAKDSE
NINAILVAIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQQATEEIQS
MIQQLQHGTREVVTVMEQSQARTDDSVQQAQIAASALENITQAVSVINDMNTQIASAAEE
QSAVAEDINRNVTNIGQVAAEVAGGADEASGASAELTKLAEQQRRLINQFRV