Protein Info for OH686_05805 in Pseudomonas sp. S08-1

Annotation: Efflux ABC transporter, ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 312 PF00005: ABC_tran" amino acids 24 to 167 (144 residues), 121.4 bits, see alignment E=4.5e-39 PF13304: AAA_21" amino acids 91 to 196 (106 residues), 43.9 bits, see alignment E=3e-15

Best Hits

KEGG orthology group: K09687, antibiotic transport system ATP-binding protein (inferred from 66% identity to psu:Psesu_3035)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (312 amino acids)

>OH686_05805 Efflux ABC transporter, ATP-binding protein (Pseudomonas sp. S08-1)
MNDSDLVIRARGLSKRFGKLTAVDHLDLSVPRAEVFGFLGPNGCGKSTTIRMLCGLLQPS
EGEVEVLGCQIPRDAEELKRRIGYMTQKFSLYEDLTVQENLEFLASVQGIGRRETRQRID
ELLERYWLTDRRKQLAGTMSGGQKQRLALAGAVLHKPDLLLLDEPTSAVDPQSRREFWDS
LFELAEEGTTLLVSTHYMDEAERCTRLGILDAGRLVADGSPRELMDALPGHPLLIECAQP
RAAQRALHGHREVLASAQIGATLRVLCASENARDDIAATLRRAGVEAELRDGEANLEDVF
VAVTRKPLEATP