Protein Info for OH686_05360 in Pseudomonas sp. S08-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 transmembrane" amino acids 163 to 187 (25 residues), see Phobius details PF05227: CHASE3" amino acids 22 to 154 (133 residues), 96.9 bits, see alignment E=2.6e-31 PF13492: GAF_3" amino acids 238 to 364 (127 residues), 31.1 bits, see alignment E=7.2e-11 PF13185: GAF_2" amino acids 241 to 360 (120 residues), 32.2 bits, see alignment E=3.1e-11 PF01590: GAF" amino acids 256 to 360 (105 residues), 35.5 bits, see alignment E=3.5e-12 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 371 to 536 (166 residues), 181.1 bits, see alignment E=7.1e-58 PF00990: GGDEF" amino acids 376 to 533 (158 residues), 163.2 bits, see alignment E=1.1e-51

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (550 amino acids)

>OH686_05360 hypothetical protein (Pseudomonas sp. S08-1)
MLCLNLLVPLFGERWVNATQVRYEQEEKLLANSQLLLAALTDGETGQRGFVITGRDDFLS
PLYLGFSEVDRLLLVLEQSAVEDAQLKHHLDRLKPVIAEQRSYLQGIVDVRRQAGMDAAV
ARISTGKGKQLMDALRIFSSEMQADLNVRLQILEQRREWQQRALVGGLVVIGLLDLLLIA
LLFHFTFRTLKEGRAARNSLRNLSEQLSSGMQRLELRNRQISLLSRMAGALHSINSFDEC
YGIIGRFAAQLFPRNAGSLTLYHPSRDVLESVAHWGDWPQDMDLFEPHSCWAIRRGQTHQ
VADPGKDLLCPHLLGTPLVEHGYICVPLMAQGEPLGVLTLSGEQAADLELAEAFAEQVSL
GVSNLSLRESLRQQSLVDALTGLHNRRFLDETLRRELLRASRKQSPVAVVLLDVDHFKRF
NDTFGHEAGDLVLRHLAMEMKRSVRTSDLACRYGGEEFCLVMPEISREDAIERCESLRLA
VSRLQVRYGGQPLGPINISLGLAWFPLDGEQMDALLHAADLALYQAKRGGRNRLCVYRRE
MDGAEETPSS